BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0005.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309609|ref|YP_003773701.1| transport/efflux transmembrane ...    74   1e-14
gi|300313899|ref|YP_003777991.1| RND family efflux transporter M...    58   5e-10

>gi|300309609|ref|YP_003773701.1| transport/efflux transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 71/131 (54%)

Query: 27  FPGEVRARVESRLGFRVGGKIVARKVDVGTVVRRGQVLMQLDPQDLQLAQRQADAAMKSA 86
            P EV++R  + + FR+ G++  R+V +G VVR+GQVL +LDP D       A A + SA
Sbjct: 59  LPAEVQSRYVTSMSFRIAGQLAERRVHLGDVVRKGQVLARLDPADANQNASAAQAELASA 118

Query: 87  LSNRDLAAAELKRYQELRDKNFVSQATLDSKQTAYQSALSGYDQAVASLRNQSNQTGYAV 146
             + D A  +L+R  +   +  +S   L+  Q A+ +ALS +  A A      NQ  Y  
Sbjct: 119 RQHLDAAEKQLQRDVQQAREALISPQQLEQSQDAHAAALSQFKAAQARAAVAGNQRDYTT 178

Query: 147 LTADVDGVVTA 157
           L A  DGV++A
Sbjct: 179 LVAQHDGVISA 189


>gi|300313899|ref|YP_003777991.1| RND family efflux transporter MFP
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score = 58.2 bits (139), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 71/130 (54%)

Query: 27  FPGEVRARVESRLGFRVGGKIVARKVDVGTVVRRGQVLMQLDPQDLQLAQRQADAAMKSA 86
            PG ++  V+S +  R GG +     D+G  V++G++L +LD  ++     QA AA + A
Sbjct: 86  LPGTLQGFVQSPISARSGGYLKRWTKDIGAEVKKGELLAELDTPEIDQQLTQALAAREQA 145

Query: 87  LSNRDLAAAELKRYQELRDKNFVSQATLDSKQTAYQSALSGYDQAVASLRNQSNQTGYAV 146
            S+ +LA + + R++ LR K+ VSQ  LD +++A+  A +    A A++       G+  
Sbjct: 146 ASSMELARSSMARWEALRKKDAVSQQELDERRSAFAQASANLAAADANVGRLRQVEGFKR 205

Query: 147 LTADVDGVVT 156
           + A   G++T
Sbjct: 206 IVAPFSGIIT 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 528,548
Number of extensions: 15954
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)