BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0002.p
         (125 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein...    73   6e-15

>gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1047

 Score = 73.2 bits (178), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 1   VTGTEVDKVRAIADQVKTVMNRNPNVIGLNDNWNESV-KALRIDLDQDKLRVLGIGSQTV 59
           ++G ++ KVRAIA+QV   M +      +  +W+E   +++  ++DQ +   LG+ SQ +
Sbjct: 689 ISGEQIPKVRAIAEQVAAEMRKESRATNIQFDWDEPAQRSVSFEIDQKRAAQLGLTSQQI 748

Query: 60  MRTVNTLLTGTAVGQYREDDKLIDILVRQPLEERATIDALNQANIPTASGKSVPLAQVAR 119
              +   L+G  + QYRE DKLI + +R P  ER     L   ++PTA+G  VPLA + +
Sbjct: 749 SNFLAMQLSGYTITQYRERDKLISVDLRAPRSERVDPARLATLSMPTANGP-VPLATLGQ 807

Query: 120 V 120
            
Sbjct: 808 F 808


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 346,407
Number of extensions: 12516
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,264,745
Effective search space: 63237250
Effective search space used: 63237250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)