BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0043.p
         (272 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313939|ref|YP_003778031.1| alpha-ketoglutarate-dependent t...   119   4e-28

>gi|300313939|ref|YP_003778031.1| alpha-ketoglutarate-dependent
           taurine dioxygenase oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 324

 Score =  119 bits (297), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 31/274 (11%)

Query: 12  LDAGFGARINNVDLARLSENPEAQQSLREALLKYGLLVIPGPVLSPQAQIAASEVFGALE 71
            DA  GA I  +DL +     E  + +R+AL+++G++V     ++PQ  +  S  FG L+
Sbjct: 49  FDAPLGAEIVGLDLNKPVSASELAR-IRKALVEHGVVVFRDQRITPQQHVDFSRRFGPLQ 107

Query: 72  EFPPAPGQIPGYPQIFRVASRATEG----YTGVGRYWHSDGSFRAVPTPMSLWHMEARPE 127
                   + G+P+I  V++    G        G  WHSD S+   P+  +L H +  P 
Sbjct: 108 VHVLNRFHLAGHPEILIVSNVVENGKPIGLVDAGADWHSDLSYMPKPSLGALLHSQELPA 167

Query: 128 VGGDTLFTDLQEAYRSLPEKTKAQIKGLQTTHRN-------------------------- 161
             GDTL+ +   A+ SLP   K  ++G +  H                            
Sbjct: 168 ERGDTLYANTAAAWDSLPAALKTLLEGKRAVHSYVYRYERLRKLSPWRAPLTQQQIDEVP 227

Query: 162 HVVHPLVMRHPHTGAEGLYLNVGLTNSIIGMDRDAAEELIATLDRYLSREGAVYRHQWKE 221
            V HP+V+ HP +G + L+++ G T+ IIG+ RD ++ L+  L  +++R   VY H+W+ 
Sbjct: 228 PVEHPVVITHPESGRKILFVSEGFTSHIIGIPRDESDALLKELHTHITRPENVYTHRWQA 287

Query: 222 GDFVVADNFRVAHRATPLSPLQRRVLNRTTVRGD 255
            D V  DN    H A       RR L RTTV GD
Sbjct: 288 HDLVFWDNRSTQHYAAITPQHLRRTLYRTTVEGD 321


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 954,713
Number of extensions: 42188
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,222,130
Effective search space: 229760440
Effective search space used: 229760440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)