BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0035.p
         (58 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC t...    99   8e-23
gi|300313998|ref|YP_003778090.1| urea transport system, ATPase c...    60   5e-11

>gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC
          transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score = 98.6 bits (244), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 49/55 (89%)

Query: 1  MNNAPIGFESTDHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAXRS 55
          M+   IGFES  HPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGA ++
Sbjct: 1  MSENAIGFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKT 55


>gi|300313998|ref|YP_003778090.1| urea transport system, ATPase
          component protein [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score = 59.7 bits (143), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 38/51 (74%)

Query: 5  PIGFESTDHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAXRS 55
          P G ++T   +L +E++TVSFDGFKA++ LNL +   E+R +IGPNGA ++
Sbjct: 36 PEGVDTTHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKT 86


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 164,820
Number of extensions: 4419
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 58
Length of database: 1,619,870
Length adjustment: 31
Effective length of query: 27
Effective length of database: 1,473,085
Effective search space: 39773295
Effective search space used: 39773295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)