BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0034.p
         (87 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC t...   172   6e-45
gi|300313998|ref|YP_003778090.1| urea transport system, ATPase c...   108   8e-26
gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa...    80   3e-17
gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa...    78   2e-16
gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC t...    75   1e-15

>gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  172 bits (435), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/87 (97%), Positives = 87/87 (100%)

Query: 1   MLLMQEPELLMLDEPVAGMSVSEREKTAQLLGRISQGRSVVVIEHDMDFVKSIAHKVTVL 60
           MLLMQEPELLMLDEPVAGMSVSEREKTA+LLGRISQGRSVVVIEHDMDFVKSIAHKVTVL
Sbjct: 169 MLLMQEPELLMLDEPVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVL 228

Query: 61  HQGKILAEGSMDKVQSDPKVIDVYLGH 87
           HQGKILAEGSM+KVQSDPKVIDVYLGH
Sbjct: 229 HQGKILAEGSMEKVQSDPKVIDVYLGH 255


>gi|300313998|ref|YP_003778090.1| urea transport system, ATPase
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  108 bits (270), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 2/88 (2%)

Query: 1   MLLMQEPELLMLDEPVAGMSVSEREKTAQLLGRISQGRSVVVIEHDMDFVKSIAH--KVT 58
           MLLMQEP+LL+LDEPVAGMS +E  +TA+LL  +    S++V+EHDM FV+ IA   KVT
Sbjct: 201 MLLMQEPQLLLLDEPVAGMSDAETARTAELLNELRGKHSIMVVEHDMGFVEEIAQGGKVT 260

Query: 59  VLHQGKILAEGSMDKVQSDPKVIDVYLG 86
           VLH+G +LAEG+M +VQS+ +VI+VYLG
Sbjct: 261 VLHEGSVLAEGNMRQVQSNERVIEVYLG 288


>gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score = 80.1 bits (196), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 59/84 (70%)

Query: 3   LMQEPELLMLDEPVAGMSVSEREKTAQLLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQ 62
           L  EPEL++LDEP  GM   + ++   L+ ++S GR+++++EH+M  +  I  +++VL +
Sbjct: 163 LAMEPELMLLDEPTQGMGHEDVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQR 222

Query: 63  GKILAEGSMDKVQSDPKVIDVYLG 86
           G +LAEGS ++V  +P+V++ Y+G
Sbjct: 223 GALLAEGSYEEVSRNPQVMEAYMG 246


>gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 77.8 bits (190), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 63/85 (74%), Gaps = 1/85 (1%)

Query: 3   LMQEPELLMLDEPVAGMSVSER-EKTAQLLGRISQGRSVVVIEHDMDFVKSIAHKVTVLH 61
           L  +P+LL+LDEPVAGM+ +E+ E  ++++    +G ++ +IEHDM FV  +  ++ VL+
Sbjct: 165 LATKPKLLLLDEPVAGMNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLN 224

Query: 62  QGKILAEGSMDKVQSDPKVIDVYLG 86
            GKI+AEG+ D+++++ +VI+ YLG
Sbjct: 225 FGKIIAEGTPDQIKNNQEVIEAYLG 249


>gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC
           transporter ATP-binding protein/permease [Herbaspirillum
           seropedicae SmR1]
          Length = 596

 Score = 74.7 bits (182), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 6   EPELLMLDEPVAGMSVSEREKTAQLLGRI-SQGRSVVVIEHDMDFVKSIAHKVTVLHQGK 64
           +P LL+LDEP AG+ + E+E  A LL ++  +G +V+++EHDMDFV  +   + V+  G 
Sbjct: 512 DPALLLLDEPAAGLRLKEKEALAALLDKLRGEGMAVLLVEHDMDFVMQLTDHIVVMEFGA 571

Query: 65  ILAEGSMDKVQSDPKVIDVYLG 86
            +AEG+  ++Q  P V++ YLG
Sbjct: 572 KIAEGTPAQIQVHPAVLEAYLG 593


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 199,710
Number of extensions: 5936
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 22
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 22
Length of query: 87
Length of database: 1,619,870
Length adjustment: 57
Effective length of query: 30
Effective length of database: 1,349,975
Effective search space: 40499250
Effective search space used: 40499250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)