BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0033.p
         (71 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC t...    82   1e-17

>gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score = 81.6 bits (200), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/39 (97%), Positives = 38/39 (97%)

Query: 33  LSFTLEIADRFLVIDKGRFVYEDTRANVDAPTISKYLSV 71
           LSFTLEIADRFLVIDKGRFVYEDTR NVDAPTISKYLSV
Sbjct: 191 LSFTLEIADRFLVIDKGRFVYEDTRENVDAPTISKYLSV 229



 Score = 57.0 bits (136), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 29/34 (85%)

Query: 1  MFNVSNLASGYGQSAVIHDINLSVAKEEIVAXLS 34
          MF VS LASGYGQS VIHD++LSVAKEEIVA + 
Sbjct: 1  MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMG 34


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 172,742
Number of extensions: 4650
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 71
Length of database: 1,619,870
Length adjustment: 43
Effective length of query: 28
Effective length of database: 1,416,265
Effective search space: 39655420
Effective search space used: 39655420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)