BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0030.p
         (134 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311941|ref|YP_003776033.1| formamidase [Herbaspirillum ser...   278   1e-76

>gi|300311941|ref|YP_003776033.1| formamidase [Herbaspirillum
           seropedicae SmR1]
          Length = 392

 Score =  278 bits (711), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 131/133 (98%), Positives = 133/133 (100%)

Query: 1   MDGVSHVGFDLIKGGMAKYNITSPIFMPSIVKPHYEQWLTFEGISVENGVNYYLDATVAY 60
           MDGVSHVGFDLIKGGMAKYNITSPIFMPSIVKPHYEQWLTFEGISVENGVNYYLDATVAY
Sbjct: 259 MDGVSHVGFDLIKGGMAKYNITSPIFMPSIVKPHYEQWLTFEGISVENGVNYYLDATVAY 318

Query: 61  RQACLKAIDYLTHFGYTGSQAYMLLTAAPVEGRIGGIVDIPNCACTVSLPTSIFDQDITP 120
           RQACLKAIDYLTHFGYTGSQAYMLLTAAPVEGRIGGIVDIPNCACTV+LPTSIFDQDITP
Sbjct: 319 RQACLKAIDYLTHFGYTGSQAYMLLTAAPVEGRIGGIVDIPNCACTVALPTSIFDQDITP 378

Query: 121 KGMLNDQSYWGRK 133
           KGMLND+SYWGRK
Sbjct: 379 KGMLNDKSYWGRK 391


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 444,000
Number of extensions: 16855
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,260,010
Effective search space: 73080580
Effective search space used: 73080580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)