BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0029.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309661|ref|YP_003773753.1| AraC family transcription regul...   149   3e-37

>gi|300309661|ref|YP_003773753.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 338

 Score =  149 bits (376), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/254 (35%), Positives = 136/254 (53%), Gaps = 9/254 (3%)

Query: 39  EGYNLSPLPDVRFLRSNRPLKRMPVLYEPGIVIVAQGRKRGYLGNEVYLYDAQHYLAVSV 98
           EG   + +P++   R   P      + +P   ++AQG KR ++G+E+Y YD  HYL  SV
Sbjct: 56  EGMLETAIPNMEIYRITCPSGPKHAVQKPVFAVIAQGSKRIFVGDEIYEYDPMHYLVASV 115

Query: 99  PVPFSMET-DASEKEPMLAIYLRLDFKIAAELMMQIDECVGPSAAK-----PRGMVSTPM 152
            +P   +    S  EP L + L LD +   EL+   DE + P+AA+      RG+    +
Sbjct: 116 DLPVVGKVMVTSPDEPYLGLRLELDTQEIGELIG--DENL-PAAAQVSEGAARGLYVNRL 172

Query: 153 ETALSISVLRFLEAMNNPLEAEILGPALRREIYFRVLSGQQGGSMRAALTMQGQFGKISR 212
           +  L  +VLR L     P +  IL P +RREI +R+L   QG  +R  +    Q  ++++
Sbjct: 173 DVDLLDAVLRLLRLQERPADVPILAPMIRREILYRLLMNGQGALLRQTVLQDSQMNRVAK 232

Query: 213 AISMIHRSYDEALAIDQLAKEAGMSVPTFHAHFKTVTDTSPMQYLKSTRLHQARLLMLRN 272
           AI +I   YD+AL ID +A++  MSV + H HFK VT  SP+QY K+ RL +AR L+L  
Sbjct: 233 AIRLIKEGYDQALRIDDIARDVHMSVSSLHHHFKLVTAMSPLQYQKNLRLQEARKLILTA 292

Query: 273 GMTAGAACTQVNFS 286
             +   A  +V + 
Sbjct: 293 DASVATAAHRVGYE 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 920,292
Number of extensions: 36020
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)