BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0022.p
         (129 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III C-methyltr...   145   1e-36

>gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III
           C-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  145 bits (365), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 79/100 (79%)

Query: 29  RARARSVSLFTSSTAPDEPSEFIMPNGDTLVQYMGGREATVTAQRLLSLGYARTTPVVVV 88
           R  ARSVSLFTSST  DEP E  MPNGDTLVQYMGGREAT TAQRLL+LG+A  TPVVVV
Sbjct: 153 RGIARSVSLFTSSTGVDEPDEVRMPNGDTLVQYMGGREATATAQRLLALGHAPDTPVVVV 212

Query: 89  ENCSRDNERILDLELGTLEQGLTQCSGPVLVMIGEALAGR 128
           ENCSR ++ I  L+L  LE GL  CSGPVLVMIG ALA R
Sbjct: 213 ENCSRPDQHIYHLQLAGLEAGLQACSGPVLVMIGPALADR 252


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 308,789
Number of extensions: 10860
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 54
Effective length of database: 1,264,745
Effective search space: 68296230
Effective search space used: 68296230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)