BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0019.p
         (122 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312408|ref|YP_003776500.1| permease [Herbaspirillum serope...   140   2e-35

>gi|300312408|ref|YP_003776500.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 376

 Score =  140 bits (354), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/122 (68%), Positives = 104/122 (85%)

Query: 1   LLAQDTQFTRGELLWRMALPLMASTLMLLAIPLSFVNPRVGRSMGLLVALLLFVVYSNTV 60
           L+A++  + RGELLWR+ALP MA TLMLLAIPLSFVNPR GRS+GLLVALLLFVVYSNTV
Sbjct: 255 LVAKNDGYARGELLWRIALPFMALTLMLLAIPLSFVNPRAGRSLGLLVALLLFVVYSNTV 314

Query: 61  SVMQSSVIQNRTSFLLAWWPVHLVVALLVIGLFFLRLKVNSRYHPAVIWSRLRRALFLKR 120
           SV Q+SV Q R +F++AWWPVH+VV LL++G+F LRL +N  YHP+ +WSR+RRA+  +R
Sbjct: 315 SVFQASVAQGRATFMMAWWPVHVVVVLLIVGMFALRLNINHPYHPSRLWSRVRRAMTFQR 374

Query: 121 QA 122
           +A
Sbjct: 375 EA 376


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 339,303
Number of extensions: 11347
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 48
Effective length of database: 1,269,480
Effective search space: 60935040
Effective search space used: 60935040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 125 (52.8 bits)