BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0011.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313813|ref|YP_003777905.1| transmembrane outer membrane po...   154   8e-39
gi|300313291|ref|YP_003777383.1| porin transmembrane protein [He...    54   8e-09

>gi|300313813|ref|YP_003777905.1| transmembrane outer membrane porin
           signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 354

 Score =  154 bits (388), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 97/226 (42%), Positives = 133/226 (58%), Gaps = 9/226 (3%)

Query: 1   LSGAYGKVLAGRSESTTGDF-SVNDPI-MGNNYSWSGASTHMRGDRRDGTLGRISNLVKY 58
           L G +G+V+AGRS STT DF    DP+    NYSW+  +    G+R+DG    +SNLVKY
Sbjct: 107 LEGGFGRVVAGRSYSTTYDFLGPFDPMGYSANYSWA-TTAGATGNRKDGMPTGVSNLVKY 165

Query: 59  EGSFGSYRIGGSYGLGEAAGSHTSDARYSAGLQYLGSSVTGVLTFDRENS-NRIFPGYDR 117
           +G F   +IG  YG GE AG   + A+Y  GL +     + V T+DR NS       YDR
Sbjct: 166 QGEFSGVKIGAMYGFGEVAGETRNGAKYGVGLGWGTGPFSVVATYDRNNSATATNTPYDR 225

Query: 118 ASNIQVSGSYAQP--LVKFFAGYRRHAKHAATASKDLRSDFVWIGASYPLSQATTVSAAI 175
           A++  ++  Y QP    KF  GYR + K  AT + DLRSDF W GA+Y  + A T+  AI
Sbjct: 226 ATSAHLAAGY-QPSEAWKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTPAMTLIGAI 284

Query: 176 YHVDLRNDPRGNNGNPTMYAGRIRYAMSARTSLYLVGAYAVXRQAE 221
           Y+ +++N    N+ +P MY+ R++YAMS RT LYL  AYA  +  +
Sbjct: 285 YYQNIKN--VANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQ 328


>gi|300313291|ref|YP_003777383.1| porin transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 365

 Score = 54.3 bits (129), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 36/232 (15%)

Query: 1   LSGAYGKVLAGRSESTTGDFSVNDPIMGNN-YSWSGASTHMRGDRRDGTLGRISNLVKYE 59
           L  ++G+++ GR  + T    +   +MG N ++      ++   R D       N + Y 
Sbjct: 108 LKNSWGQLMLGRQVNMTYLSQLKTDVMGPNLFAIGSIDAYLPNARSD-------NAIGYL 160

Query: 60  GSFGSYRIGGSYGLG----------------EAAGSHTSDARYSAGLQYLG-----SSVT 98
           G+F  + +G +Y  G                E AG+  +  + +A L Y G     +S  
Sbjct: 161 GNFSGFTVGATYSFGRDAAGPAGPAATNCPGEVAGNSKACRQVTALLGYDGKGWGVTSSY 220

Query: 99  GVLTFDRENSNRIFPGYDRASNIQVSGSYAQPLVKFFAGY-RRHAKHAATASKDLRSDFV 157
            +L  +   SN +    +    + ++G +    VK   G   R  + AA  + D  SD  
Sbjct: 221 DILYGNTGASNGMTSSDNTDQRVTLNGYFMLGDVKIGGGVVDRRTRAAANTNTD--SDLY 278

Query: 158 WIGASYPLSQATTVSAAIYHVDLRNDPRGNNGNPTMYAGRIRYAMSARTSLY 209
           ++G SYPLS A  + A +  +D++N P     + T+   R+ Y +S RT++Y
Sbjct: 279 YLGVSYPLSVALVLDAQVSRLDVKNSPN----DVTLSVARLTYNLSKRTAVY 326


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 744,985
Number of extensions: 30962
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 4
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)