BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0010.p
         (196 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312415|ref|YP_003776507.1| exodeoxyribonuclease III protei...   316   8e-88
gi|300313958|ref|YP_003778050.1| exodeoxyribonuclease III protei...    57   7e-10

>gi|300312415|ref|YP_003776507.1| exodeoxyribonuclease III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  316 bits (810), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 148/184 (80%), Positives = 163/184 (88%)

Query: 12  KXPITDVVKNNPLFEDEQQRIIAATIEGVRYVCAYIPNGQAPDSEKYQYKLKWLAALHEW 71
           + P+ DVVKNNPLF DEQQRIIAATIEGVRYVCAYIPNGQ+ +SEKY YKL WLAALHEW
Sbjct: 70  RHPMNDVVKNNPLFPDEQQRIIAATIEGVRYVCAYIPNGQSLESEKYPYKLNWLAALHEW 129

Query: 72  LAQEQLLHPRLALLGDYNIAPEDRDVHDPAAWVGQNLVSEPERAAFFHLEKMGFTDAFRK 131
           LAQE+  +PRLALLGDYNIAPEDRDVHDP AW GQ LVSEPER AF  L+ +G TD++R 
Sbjct: 130 LAQEKAKNPRLALLGDYNIAPEDRDVHDPVAWQGQVLVSEPEREAFRKLQALGLTDSYRL 189

Query: 132 FEQPEKLYSWWDYRQMGFRLNKGLRIDHILLTAPLAAQCTACVIDKVPRKWEQPSDHAPV 191
           FEQPEK+YSWWDYRQMGFRLN+GLRIDHILL+  L  +CTACVIDKVPRKWEQPSDHAPV
Sbjct: 190 FEQPEKMYSWWDYRQMGFRLNRGLRIDHILLSEELVPRCTACVIDKVPRKWEQPSDHAPV 249

Query: 192 VATL 195
           +ATL
Sbjct: 250 IATL 253


>gi|300313958|ref|YP_003778050.1| exodeoxyribonuclease III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 57.4 bits (137), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 15/178 (8%)

Query: 21  NNPLFEDEQQRIIAATIEGVRYVCAYIPNGQAPDSEKYQYKLKWLAALHEWLAQEQLLHP 80
            N  F+DE  R +      +  +  Y P+G + + E+ + K +++ A    L + +    
Sbjct: 85  GNTEFDDEG-RYVECDYGDLTVISLYAPSGSSSE-ERQEAKFRFMEAFLPHLMELEKSGR 142

Query: 81  RLALLGDYNIAPEDRDVHDPAAWVGQNLVSE--PERAAFFH--LEKMGFTDAFRKF--EQ 134
            + + GD+NIA ++ D+ +   W      S   PE  A+     +++G  D +R+   E 
Sbjct: 143 EVVICGDWNIAHKEIDLKN---WKSNQKNSGFLPEERAWMTRIFDQLGLVDVYRRLHPET 199

Query: 135 PEKLYSWWDYRQMGFRLNKGLRIDHILLTAPLAAQCTACVIDKVPRKWEQPSDHAPVV 192
             + Y+WW  R   +  N G RID+ + T  +AA+  +  I K  R     SDHAP+ 
Sbjct: 200 TGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAIYKEQR----FSDHAPLT 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 700,443
Number of extensions: 28911
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 196
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 116
Effective length of database: 1,241,070
Effective search space: 143964120
Effective search space used: 143964120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)