BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0005.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312417|ref|YP_003776509.1| propionyl-CoA ligase [Herbaspir...   263   7e-72
gi|300310875|ref|YP_003774967.1| acetyl-coenzyme A synthetase [H...   135   1e-33

>gi|300312417|ref|YP_003776509.1| propionyl-CoA ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 628

 Score =  263 bits (671), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 119/156 (76%), Positives = 138/156 (88%)

Query: 1   MSFASFYQQSIDDPDTFWANEARRIDWHAPFTKTLDYTRPPFARWFIGGETNLCHNAVDR 60
           M +  FY+QS++ P+ FWA EA+RI W  PF++TLDY+RPPFARWFI G+TNLCHNAVDR
Sbjct: 1   MQYEQFYRQSVEQPEAFWAQEAQRIHWQQPFSRTLDYSRPPFARWFIDGQTNLCHNAVDR 60

Query: 61  HLAQRADQAALIAVSTETNTEKTYTFRELHREVSAMAAIMLSLGVKRGDRVLIYMPMIAE 120
           HL +RA QAALIA+STETN+E+ YT+ EL +EV AMAA M +LGV+RGDRVLIYMPMIAE
Sbjct: 61  HLPERAQQAALIAISTETNSERVYTYAELQQEVMAMAASMQALGVQRGDRVLIYMPMIAE 120

Query: 121 AVFAMLACARIGAVHSVVFGGFASNSLATRIDDAQP 156
           AVFAMLACARIGAVHSVVFGGFASNSLA+RIDDAQP
Sbjct: 121 AVFAMLACARIGAVHSVVFGGFASNSLASRIDDAQP 156


>gi|300310875|ref|YP_003774967.1| acetyl-coenzyme A synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 660

 Score =  135 bits (341), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/144 (47%), Positives = 95/144 (65%), Gaps = 3/144 (2%)

Query: 13  DPDTFWANEAR-RIDWHAPFTKTLDYTRPPFARWFIGGETNLCHNAVDRHLAQ-RADQAA 70
           D +  WA  A+  + WH PFT+TLD +  PF +WF  G+ N+ +N +D +L    AD+ A
Sbjct: 42  DYEGTWARLAKDNLKWHKPFTQTLDESNAPFYKWFADGQVNVSYNCLDVNLENGNADKTA 101

Query: 71  LIAVSTETNTEKTYTFRELHREVSAMAAIMLSLGVKRGDRVLIYMPMIAEAVFAMLACAR 130
           +I  S +    +  ++RELH++V   A  + SLG+K+GDRV+IYMPM  E V AM ACAR
Sbjct: 102 VIFESDDGKVTRV-SYRELHQKVCQFANGLKSLGIKKGDRVVIYMPMSVEGVAAMQACAR 160

Query: 131 IGAVHSVVFGGFASNSLATRIDDA 154
           IGA HSVVFGGF++ SL  R+ DA
Sbjct: 161 IGATHSVVFGGFSAKSLHERVIDA 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 491,976
Number of extensions: 17551
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)