BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0029.p
         (120 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312596|ref|YP_003776688.1| 3-isopropylmalate dehydratase l...    69   9e-14

>gi|300312596|ref|YP_003776688.1| 3-isopropylmalate dehydratase
          large subunit [Herbaspirillum seropedicae SmR1]
          Length = 466

 Score = 69.3 bits (168), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 1  MARTLYQKLVESHTVARLDEQNVLLYADLHIMNEYTSPQAFAGLHEAGRPVAVPGQHLSV 60
          M +TLY KL ESH V   D+   +LY D H+++E TSPQAF GL  AGR       +L V
Sbjct: 1  MLKTLYDKLWESHVVHTEDDGTAILYIDRHLLHEVTSPQAFEGLKLAGRQPWRNSANLMV 60

Query: 61 VDHIIPTHPVSFRIIQDPSSALQASNLAKXAK 92
           DH +PT   +   I DP S LQ   L   AK
Sbjct: 61 ADHNVPTTDRAHG-IADPISRLQVETLDGNAK 91


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 398,367
Number of extensions: 14862
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,269,480
Effective search space: 58396080
Effective search space used: 58396080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)