BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0027.p
         (145 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312596|ref|YP_003776688.1| 3-isopropylmalate dehydratase l...   100   7e-23

>gi|300312596|ref|YP_003776688.1| 3-isopropylmalate dehydratase
           large subunit [Herbaspirillum seropedicae SmR1]
          Length = 466

 Score =  100 bits (248), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 65/102 (63%)

Query: 42  GAAFDVEHVFDANEVAPYVTWGTSPDQAVPVTGKVPAPASELDPVVRAASEQALRYTGLQ 101
           GA FD+    +A E+ P VTWGTSP+  V V  +VP P  E DP  R   E+AL Y  L+
Sbjct: 270 GAKFDMVVTLNAAEIKPQVTWGTSPEMVVAVDARVPDPDKEKDPTKRDGMEKALAYMALK 329

Query: 102 SGTNMEGIAVQRVFIGSCTNARIEDLRIVAGIVKGRKVAPSV 143
             T +E I + +VFIGSCTN+RIEDLR  A +V+G+  A +V
Sbjct: 330 PNTPIEDIRIDKVFIGSCTNSRIEDLREAAKVVRGKFRASNV 371


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 472,042
Number of extensions: 19788
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,255,275
Effective search space: 85358700
Effective search space used: 85358700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)