BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0018.p (131 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313150|ref|YP_003777242.1| glutamate/aspartate ABC transpo... 211 2e-56 gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transpo... 101 2e-23 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 57 4e-10 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 56 1e-09 gi|300313611|ref|YP_003777703.1| amino acid ABC transporter perm... 55 1e-09 >gi|300313150|ref|YP_003777242.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 249 Score = 211 bits (536), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 105/114 (92%), Positives = 110/114 (96%) Query: 18 GQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATY 77 GQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATY Sbjct: 136 GQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATY 195 Query: 78 SMREFTFQTFESLTGATIIYIIISVIALLLARFLERVTAVPGYITTGSSSTGGH 131 SMREFTFQTFE+LTGATIIY+IISVIAL +AR LE+VTAVPGYIT GS+S GGH Sbjct: 196 SMREFTFQTFEALTGATIIYVIISVIALFMARLLEKVTAVPGYITGGSTSAGGH 249 >gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 241 Score = 101 bits (252), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 52/102 (50%), Positives = 72/102 (70%) Query: 18 GQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATY 77 GQ+ AG ALGLT QTY +VLLPMA RI++P LT+EF I KNS+VA TIGL+EL A Sbjct: 136 GQKGAGLALGLTLGQTYLFVLLPMAMRIVLPPLTSEFLNIFKNSAVASTIGLLELAAQGR 195 Query: 78 SMREFTFQTFESLTGATIIYIIISVIALLLARFLERVTAVPG 119 + ++T Q +E+ T+ Y++I++ + L R LER T++PG Sbjct: 196 QLVDYTAQPYEAFIAVTLAYMLINICVMSLMRILERKTSLPG 237 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 57.4 bits (137), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 55/95 (57%) Query: 18 GQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATY 77 GQ A +LG++ + T R V+LP AFR ++P L N AI+K+SS+A IGL EL A Sbjct: 147 GQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLGNNAIAIVKDSSLASAIGLAELAYAAR 206 Query: 78 SMREFTFQTFESLTGATIIYIIISVIALLLARFLE 112 ++ + +E ++IY +I++ L R LE Sbjct: 207 TVSGAYARYWEPYLTISVIYWLITLALSALVRHLE 241 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 54/96 (56%) Query: 18 GQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATY 77 GQ A ++GLT QT RY+++P A RI +P+++N ++IK++S+ I + EL AT Sbjct: 118 GQWNAAFSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATK 177 Query: 78 SMREFTFQTFESLTGATIIYIIISVIALLLARFLER 113 + TF+ A IY ++S+ L LE+ Sbjct: 178 EVIAVTFRPLPLYVAAAAIYWMLSLCFEALQHRLEK 213 >gi|300313611|ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 247 Score = 55.5 bits (132), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 1/100 (1%) Query: 18 GQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATY 77 GQ A A+LG+ T RYV+LP AFR ++P L NE ++K+SS+ IGL EL A Sbjct: 144 GQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEAITLLKDSSLVSAIGLAELAYAAR 203 Query: 78 SMREFTFQTFESLTGATIIYIIISV-IALLLARFLERVTA 116 ++ + +E +++Y +++ +AL++AR + +A Sbjct: 204 TVAGTYARYWEPYITISVLYFSMTICLALVVARLESKYSA 243 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 232,615 Number of extensions: 5731 Number of successful extensions: 45 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 9 Length of query: 131 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 56 Effective length of database: 1,264,745 Effective search space: 70825720 Effective search space used: 70825720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 125 (52.8 bits)