BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0016.p (117 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo... 156 4e-40 gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transpo... 112 6e-27 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 79 9e-17 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 71 2e-14 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 70 3e-14 >gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 156 bits (395), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 74/76 (97%), Positives = 75/76 (98%) Query: 1 MIELNNVSKWYGSFQVLTDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 MIELNNVSKWYGSFQVLTDC+TSV KGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV Sbjct: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 Query: 61 DGVSVGDPKTNLSKLR 76 DGVSVGDPKTNLSKLR Sbjct: 61 DGVSVGDPKTNLSKLR 76 >gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 112 bits (281), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 51/76 (67%), Positives = 62/76 (81%) Query: 1 MIELNNVSKWYGSFQVLTDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 MI L +VSK+YG F+VL+ C +AKG+VVVVCGPSGSGKSTLIKT+N LEP Q+G+IT+ Sbjct: 1 MITLQDVSKYYGDFKVLSACNAVIAKGEVVVVCGPSGSGKSTLIKTINALEPIQEGSITI 60 Query: 61 DGVSVGDPKTNLSKLR 76 DGV V D TNL +LR Sbjct: 61 DGVKVNDRSTNLPRLR 76 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 79.0 bits (193), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 54/76 (71%) Query: 1 MIELNNVSKWYGSFQVLTDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 MIE+ +SK +G +VL D + SVA+G+VV + GPSGSGKST+++ +NGLE +++G I + Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 61 DGVSVGDPKTNLSKLR 76 DG V ++ +LR Sbjct: 61 DGQRVDRDGPDIHRLR 76 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 71.2 bits (173), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 51/76 (67%) Query: 1 MIELNNVSKWYGSFQVLTDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 ++E+NN++K +GS QVL + SV +G VV + G SGSGKST+++ +NGLE G+ITV Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 61 DGVSVGDPKTNLSKLR 76 G + +L +LR Sbjct: 63 AGHKLTHKHEHLIELR 78 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 70.5 bits (171), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 47/76 (61%) Query: 1 MIELNNVSKWYGSFQVLTDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 MI++N + K +G +L + +VV V GPSGSGKST ++ +NGLE G I + Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 61 DGVSVGDPKTNLSKLR 76 +GV + DPK NL+ LR Sbjct: 61 EGVKLNDPKVNLNALR 76 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.131 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 291,301 Number of extensions: 9242 Number of successful extensions: 223 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 224 Number of HSP's successfully gapped: 17 Length of query: 117 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 43 Effective length of database: 1,269,480 Effective search space: 54587640 Effective search space used: 54587640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)