BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0015.p (208 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo... 323 6e-90 gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transpo... 258 2e-70 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 197 6e-52 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 190 7e-50 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 177 5e-46 >gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 323 bits (828), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 153/167 (91%), Positives = 162/167 (97%) Query: 42 RARIGMVFQNFELFPHLSIRENLTIGQVKVLGRSVDEATEKGLKYLDRVGLIAQKDKFPG 101 RARIGMVFQNFELFPHLSIRENLTIGQ+KVLGRS +EATEKGLKYLDRVGL+A KDKFPG Sbjct: 76 RARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKYLDRVGLLAHKDKFPG 135 Query: 102 QLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHE 161 QLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHE Sbjct: 136 QLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHE 195 Query: 162 MGFARKVANRVIFMDKGLIVEDCKKEDFFGSPRSDRARDFLAKIITH 208 MGFARKVANRV+FMDKG++VEDC K++FF PRS+RARDFLAKIITH Sbjct: 196 MGFARKVANRVVFMDKGVVVEDCAKDEFFAQPRSERARDFLAKIITH 242 >gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 258 bits (660), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 124/169 (73%), Positives = 145/169 (85%), Gaps = 2/169 (1%) Query: 42 RARIGMVFQNFELFPHLSIRENLTIGQVKVLGRSVDEATEKGLKYLDRVGLIAQKDKFPG 101 R+R+GMVFQ+FELFPHL+I +NLT+ Q+KVLGR DEA + G+KYL+RVGL A K+PG Sbjct: 76 RSRVGMVFQHFELFPHLTIIQNLTLAQIKVLGRKKDEAHQHGMKYLERVGLKAHAGKYPG 135 Query: 102 QLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHE 161 QLSGGQQQRVAIARAL+MDPI MLFDEPTSALDPEM+NEVLDVMV LAQEGMTM+ VTHE Sbjct: 136 QLSGGQQQRVAIARALAMDPICMLFDEPTSALDPEMVNEVLDVMVELAQEGMTMVCVTHE 195 Query: 162 MGFARKVANRVIFMDKGLIVEDCKKEDFF--GSPRSDRARDFLAKIITH 208 MGFAR VA+RVIFMD+G IVED K+DFF G S R+R FL+KI++H Sbjct: 196 MGFARMVAHRVIFMDQGSIVEDRSKDDFFAGGGDHSARSRQFLSKILSH 244 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 197 bits (501), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 96/167 (57%), Positives = 126/167 (75%) Query: 40 SXRARIGMVFQNFELFPHLSIRENLTIGQVKVLGRSVDEATEKGLKYLDRVGLIAQKDKF 99 + RA +GMVFQ F LFPH+++ ENL + ++V S EA K L +VGL+ + D F Sbjct: 74 ALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAVLVAEKLLQKVGLLDKIDAF 133 Query: 100 PGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVT 159 P QLSGGQQQRVAIARAL+M+P MLFDEPTSALDPE++ EVL VM LA+EGMTM+VVT Sbjct: 134 PNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMKQLAEEGMTMVVVT 193 Query: 160 HEMGFARKVANRVIFMDKGLIVEDCKKEDFFGSPRSDRARDFLAKII 206 HEMGFAR+V++RV+F+D+G+I+E+ + G P +R RDFL K++ Sbjct: 194 HEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERTRDFLRKVL 240 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 190 bits (483), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 93/165 (56%), Positives = 119/165 (72%) Query: 42 RARIGMVFQNFELFPHLSIRENLTIGQVKVLGRSVDEATEKGLKYLDRVGLIAQKDKFPG 101 R R+GMVFQ F LFPH ++ EN+T G + V G + +A + + LD+VGL A+ D +P Sbjct: 76 RTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAMSLLDKVGLAARCDAYPA 135 Query: 102 QLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHE 161 QLSGGQQQRVAIAR+L+M P A+LFDEPTSALDPE++ EVL VM LA +GMTM+VVTHE Sbjct: 136 QLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMRTLAADGMTMIVVTHE 195 Query: 162 MGFARKVANRVIFMDKGLIVEDCKKEDFFGSPRSDRARDFLAKII 206 MGFAR+VA+RV F+ G IVE P+ R +DFL ++I Sbjct: 196 MGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRVI 240 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 177 bits (450), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 88/164 (53%), Positives = 118/164 (71%) Query: 40 SXRARIGMVFQNFELFPHLSIRENLTIGQVKVLGRSVDEATEKGLKYLDRVGLIAQKDKF 99 + R ++GM+FQ F LFPHLS+ N+ I + V G S EA + L++VGL + D + Sbjct: 76 NLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKANLEKVGLGHKFDAY 135 Query: 100 PGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVT 159 P QLSGGQQQRVAIARALSM P A+L DE TSALDPE++NEVL VM GLA+EGMT+++VT Sbjct: 136 PDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMRGLAKEGMTLLMVT 195 Query: 160 HEMGFARKVANRVIFMDKGLIVEDCKKEDFFGSPRSDRARDFLA 203 HEM FAR+V NR++FM +G + E E+ FG+P++ + F+ Sbjct: 196 HEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 559,330 Number of extensions: 19921 Number of successful extensions: 335 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 238 Number of HSP's successfully gapped: 129 Length of query: 208 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 127 Effective length of database: 1,236,335 Effective search space: 157014545 Effective search space used: 157014545 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)