BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0006.p (864 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310659|ref|YP_003774751.1| aerobic-type carbon monoxide de... 424 e-119 gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase s... 149 7e-37 gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit ... 83 1e-16 gi|300310653|ref|YP_003774745.1| cytochrome protein [Herbaspiril... 67 6e-12 >gi|300310659|ref|YP_003774751.1| aerobic-type carbon monoxide dehydrogenase large subunit [Herbaspirillum seropedicae SmR1] Length = 759 Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust. Identities = 266/718 (37%), Positives = 390/718 (54%), Gaps = 58/718 (8%) Query: 187 DGYIAIHQDGTVTLFSGKVDLGQGLRIAIRQMAAEELGIGVDKIEMIEGDTALTPDQGPT 246 D ++AI +G V F+G VDLG G+R ++ Q+ AEEL + ++++ MI G T P+QGPT Sbjct: 54 DVFVAILGEGQVLAFNGHVDLGTGIRTSLAQIVAEELSLSMEQVSMILGHTEEAPNQGPT 113 Query: 247 AGXPP---------------------MAAARLQTPASGLTVQDG-VVRPKAGGAGLSFAE 284 MAAAR TP L V+ G ++ G +S+ E Sbjct: 114 IASATIQISAMPLRKAAAQAREHLLAMAAARWATPVGRLRVEAGCIIDADVAGRTISYFE 173 Query: 285 LVGGKRFDLKVD-AKAPLNNPQHYRVVGKPLLRPDVPAKVTGTHTYVHDVKLPGMLHGRV 343 L+ G+R L ++ + PL Y +VG+ R D+PAKV YVHDV++PGMLHGRV Sbjct: 174 LLRGQRIVLTLEPGEVPLKPVSQYTLVGRSSQRVDIPAKVRAQPVYVHDVRVPGMLHGRV 233 Query: 344 IRAASEGA--------HIVSVDQSSISKFPG-VKVVRLGDFLAVAAPDEWDAIQAAAALK 394 +R G +++VD+ S++ PG V VV GDF+ V A E A +A LK Sbjct: 234 VRPPHPGRDGGDFVGRSLLAVDRQSVAHIPGLVAVVVEGDFIGVVAEREEQAQRAMRELK 293 Query: 395 VVWSVSDKLMGHDKVEQWLRNGPFDAEETLVKKGDAAAALQGATGKISASYYWPIQTHGS 454 V W L D +E LR+ P E LV++GD AA A G I +Y WP Q H S Sbjct: 294 VQWKSIPPLPPMDDLEARLRSLPARRRE-LVRQGDPDAASASAAGHIERTYVWPYQLHAS 352 Query: 455 IGPSCAVADVGAKQATIYTASQGTHRYRPAYAQMLGMPNEAVRLVYVDGAGCYGMNGHDD 514 IGPSCAVAD + T+++ +Q H R +++ + ++ ++ ++ +GCYG N DD Sbjct: 353 IGPSCAVADWRPEGLTVWSGTQNPHVMRIDLSRLCDLDEGSIEVIRLEASGCYGRNCADD 412 Query: 515 AAADAALMSKALGKPVRVQWSRQDEHGFDPKGPPQALTLEGALNADKSIAVWRTEMWLPR 574 ADAAL+S+A+G+PVRVQ +R+ EH ++PKG Q + + G ++A ++ +R + P Sbjct: 413 VVADAALLSRAVGRPVRVQLTREQEHAWEPKGAAQLMDVCGGVDAQGRLSHYRFQTRYPS 472 Query: 575 ATASLPTVPLLAPQTAGM--PQPKGISTGLISQNGDPPYEVANVTVGVHWHDSAPL-RPA 631 A P+LA G P+P+ + G + PPY ++ + D AP+ R Sbjct: 473 NDA-----PVLALLLTGKIAPEPRVLEMG--DRTAVPPYAYPHMQIDC--DDVAPIVRAG 523 Query: 632 NIRAPGKIANIYAVECFTDELAAQAGMDPLAFRLQSLKDARGAEVLKRTAALFGWQSRAV 691 +R + N +A E F DELA AG D LAFRL L D R +E+L+ A GW + A Sbjct: 524 WLRGVSAMPNSFAHEVFIDELAELAGADRLAFRLAHLPDQRASELLQAVAHKAGWVAHA- 582 Query: 692 AAGVANQTNNANKTNKTNKRGRGIAYSHYKHNE------TYVAMAMEVEVDRASGEIRVL 745 Q + RGRGIAY+ Y H++ + A ++VEVD +G + V Sbjct: 583 ------QGSRGQVQADGKLRGRGIAYARYVHSKFPGFGAAWSAWVIDVEVDPVTGALAVT 636 Query: 746 RVACAHDCGLIINPDGLRAQIEGSILQTISRSLYEEIRFDTRRVQNVDWAGYPILAFPAV 805 + D G+++NP G+R Q+ G+ILQ++SR L E + F +++W YPIL F V Sbjct: 637 SLVVGQDTGMMVNPAGVRHQMHGNILQSLSRVLKERVAFGPHGASSLEWGAYPILHFTEV 696 Query: 806 PELRIELIDRPAMPPLGGGEAAASPVTAALANAVWDAVGIRLRTVPFTPERVKAALQK 863 P + I L++R PP+G GE+A+ P AAL+NA++DA G RLR PF E + AALQ+ Sbjct: 697 PPIEIVLMERQDQPPMGAGESASVPSAAALSNALFDATGRRLRQPPFNAECILAALQE 754 >gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase subunit alpha oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 160 Score = 149 bits (377), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 79/150 (52%), Positives = 94/150 (62%), Gaps = 8/150 (5%) Query: 4 VTFTVNGTARSVDVRDPDQPLLYALRNSFGLTGPKFGCGLGQCGACTVLLDQTPLRSCVT 63 +TF VNG S+D+ D PLL LRN L GPKFGCGLG+CGACTVL+D RSCV Sbjct: 7 ITFHVNGVPVSLDIA-ADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSCVI 65 Query: 64 PLSAVAGKSITTIEGLGTPDKPHPVQAAFIAEQAAQCGYCANGMVMTSAALLASNPKPSE 123 PL+ VA + +TT++GL + PVQ AFI EQ AQCGYC NGM+MT ALL +P PSE Sbjct: 66 PLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTPSE 125 Query: 124 AEIKDALAAXPPAKPKSRTRCGALVVTLVA 153 EI+ L + RCG V L A Sbjct: 126 DEIRHEL-------DFNLCRCGTHVEILRA 148 >gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit A [Herbaspirillum seropedicae SmR1] Length = 494 Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 13/142 (9%) Query: 3 TVTFTVNGTARSVDVRDPDQPLLYALRNSFGLTGPKFGCGLGQCGACTVLL-----DQTP 57 ++ F G SV P + +L LR TG K GC G CGACTV++ +Q Sbjct: 7 SIQFYFRGQTHSVAGHSPTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELQGEQLA 66 Query: 58 LRS---CVTPLSAVAGKSITTIEGLGTPD-KPHPVQAAFIAEQAAQCGYCANGMVMTSAA 113 L++ C+ L + G+++ T+E L D HPVQ A + +QCG+C G VM+ Sbjct: 67 LKTVNACIQFLPTLDGRALFTVEDLKQADGSLHPVQQAMVECHGSQCGFCTPGFVMSLWG 126 Query: 114 LLASNPK----PSEAEIKDALA 131 L + + PS+ EI DAL+ Sbjct: 127 LYLRHEQDGVTPSKREIDDALS 148 >gi|300310653|ref|YP_003774745.1| cytochrome protein [Herbaspirillum seropedicae SmR1] Length = 974 Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 76/271 (28%), Positives = 113/271 (41%), Gaps = 35/271 (12%) Query: 609 PPYEVANVTVGVHWHDSAPLRPANIRAPGKIANIYAVECFTDELAAQAGMDPLAFRLQSL 668 PPY+ +V V S P+ A +A E F DE+A + G DP+ +RL L Sbjct: 281 PPYDWRSVHVSAALEASVPV----------AATCFAQEVFLDEVAQRLGQDPVQYRLAHL 330 Query: 669 KDARGAEVLKRTAALFGWQSRAVAAGVANQTNNANKTNKTNKRGRGIAYSHYKHNETYVA 728 D+ G ++++ A W A Q + I + +++ A Sbjct: 331 PDSHGRDLIRSVAHGARWHP----ARQQGQRQGGRLRGRGFAYASTIEQHAGQPVQSWSA 386 Query: 729 MAMEVEVDRASGEIRVLRVACAHD---CGLIINPDGLRAQIEGSILQ-----TISRSLYE 780 EVE D ASGE+ V +V HD G + AQ L +++S++ Sbjct: 387 WVAEVEYDEASGELSVTKVTAGHDVRAAGQAPATSPVLAQANAERLDQQARLALAQSMHG 446 Query: 781 EIRFDTRRVQNVDWAGYPI-----LAFPAVPEL-RIELIDRPAM---PPLGGGEAAASPV 831 FD + AG P L P L +EL+ PA L G A P Sbjct: 447 GQGFDAWSSE----AGLPSTLPSSLGLPQRTALPTVELVGTPAALQNIQLNAGAAFTLPA 502 Query: 832 TAALANAVWDAVGIRLRTVPFTPERVKAALQ 862 AA++NAV+ A G+RLR PF+ E+++ AL Sbjct: 503 AAAISNAVYAATGVRLRQAPFSGEQIRLALN 533 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,764,045 Number of extensions: 120299 Number of successful extensions: 390 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 380 Number of HSP's successfully gapped: 4 Length of query: 864 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 770 Effective length of database: 1,174,780 Effective search space: 904580600 Effective search space used: 904580600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)