BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0002.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312450|ref|YP_003776542.1| D-galactarate dehydratase [Herb...   392   e-110
gi|300313170|ref|YP_003777262.1| altronate hydrolase [Herbaspiri...   112   2e-26

>gi|300312450|ref|YP_003776542.1| D-galactarate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 522

 Score =  392 bits (1006), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/201 (93%), Positives = 194/201 (96%)

Query: 2   PLEGYTFEGYRNADGSVGTRNLLAITTTVQCVAGVVEHAVKRIREELLPKYPNVEDVVAL 61
           PLEGYTFEGYRNADGSVGTRNLLAITTTVQCVAGVVEHAVKRIR ELLPKYPNVEDVVAL
Sbjct: 114 PLEGYTFEGYRNADGSVGTRNLLAITTTVQCVAGVVEHAVKRIRAELLPKYPNVEDVVAL 173

Query: 62  EHTYGCGVAIDAPNADIPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPESIIPIHK 121
           EHTYGCGVAIDAPNA IPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPE++IPIHK
Sbjct: 174 EHTYGCGVAIDAPNAGIPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPENMIPIHK 233

Query: 122 EGEAYVVCLQDSEHVGFNSMIDSILKMAELRLQELDKRRRVTCPASDLVVGVQCGGSDAF 181
           +GE YVVCLQD+EHVGFNSMIDSI+ MAE RL EL+KRRR TCPASDLVVGVQCGGSDAF
Sbjct: 234 QGEPYVVCLQDAEHVGFNSMIDSIMNMAEARLTELNKRRRETCPASDLVVGVQCGGSDAF 293

Query: 182 SGVTANPAVGFATDLLVRAGA 202
           SGVTANPAVGFATDLLVRAGA
Sbjct: 294 SGVTANPAVGFATDLLVRAGA 314


>gi|300313170|ref|YP_003777262.1| altronate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 511

 Score =  112 bits (281), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 104/200 (52%), Gaps = 9/200 (4%)

Query: 7   TFEGYRNADGSVGTRNLLAITTTVQCVA----GVVEHAVKRIREELLPKYPNVEDVVALE 62
           TF G    DG V TRN + + T+V C A     + ++  + I  E+L  YPN++ VVAL 
Sbjct: 109 TFMGIVRPDGRVATRNYIGVLTSVNCSATAARAIADYFRRDIHPEVLADYPNIDGVVALT 168

Query: 63  HTYGCGVAIDAPNADIPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPESIIPIHKE 122
           H  GC +        I  RTL   + +PNF    +VV LGCE  Q + L+    +   KE
Sbjct: 169 HGQGCALDSQGEPLQILRRTLAGYATHPNFAA-VLVVGLGCETNQISGLMESHNL---KE 224

Query: 123 GEAYVVCLQDSEHVGFNSMIDSILKMAELRLQELDKRRRVTCPASDLVVGVQCGGSDAFS 182
           GE +             ++   I K+ ++ L + +  +R    A  L +G+QCGGSD +S
Sbjct: 225 GEYFHTFTIQGTGGTAKTVALGIEKIKKM-LPKANDIKREPVSAKHLTLGLQCGGSDGYS 283

Query: 183 GVTANPAVGFATDLLVRAGA 202
           G+TANPA+G A DLLVR G 
Sbjct: 284 GITANPALGAAVDLLVRHGG 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 675,253
Number of extensions: 27445
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)