BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0002.p (197 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 67 1e-12 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 63 1e-11 gi|300313896|ref|YP_003777988.1| two component transcription res... 63 1e-11 gi|300312322|ref|YP_003776414.1| two component hybrid sensor his... 63 2e-11 gi|300313245|ref|YP_003777337.1| two component response regulato... 60 9e-11 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 67.0 bits (162), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 31/185 (16%) Query: 1 LHGGSVHVFSAGPGAGSVFTIKLPAVLSDATPILLPLTPDSLHDLQPAE----------- 49 L GG + V S+ PG GS F L + D + +L P D QP + Sbjct: 1100 LMGGQLQV-SSEPGRGSRFWFDLQLAVDDDS-VLGPAAADDAARPQPLQAASHTAGSRAP 1157 Query: 50 ------------KGCAILIVDDNLDAAQILGELLTMQGHEIRIAYDGPS----ALDIVKD 93 +G IL+V+DN Q+ ELL + G ++ A G A D + Sbjct: 1158 ETARSAPDAQCLQGVQILLVEDNPVNRQVASELLALSGAQVTCADSGSMGVAMACDPARH 1217 Query: 94 FTPRIALLDIGLPIMDGYEVAGHLRAMPQLDGIRLIALTGYGQASDKLRSLQAGFDHHLV 153 F + L+D+ +P MDG E +R +L G+ ++A+T DK R ++AG H+ Sbjct: 1218 FD--LVLMDLQMPGMDGIEATRRIRGQYELRGLPILAMTANASPEDKQRCIEAGMAGHIA 1275 Query: 154 KPVDI 158 KP+DI Sbjct: 1276 KPIDI 1280 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 14/137 (10%) Query: 36 PLTPDSLHDLQPAEKGCAILIVDDNLDAAQILGELLTMQGHEIRIAYDGPSALDIVKDFT 95 P TP H Q IL+V+DN+ ++ L G+ IA +G AL+ + Sbjct: 465 PATPRQGHSGQRD-----ILLVEDNVMNQKVAVYQLNAMGYAADIAANGLEALERLARHR 519 Query: 96 PRIALLDIGLPIMDGYEVAGHLRAMP-QLDGIRLIALTGYGQASDKLRSLQAGFDHHLVK 154 + L+D +P++DGYE +R M +L ++A+T A D+ R L+AG D +L K Sbjct: 520 YALVLMDCQMPLLDGYETTRRIRRMQGELAHTTIVAMTANAMAGDRERCLEAGMDDYLTK 579 Query: 155 PVDIDVVEELIRSTLAA 171 P L+RS L+A Sbjct: 580 P--------LLRSQLSA 588 >gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 4/128 (3%) Query: 54 ILIVDDNLDAAQILGELLTMQGHEIRIAYDGPSALDIVKDFTPRIALLDIGLPIMDGYEV 113 ILIV+D A++L + L + G+ R G +ALD V+ P + LLDI LP MDG+E+ Sbjct: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 Query: 114 AGHLRAMPQLDGIRLIALTGYGQASDKLRSLQAGFDHHLVK-PVDIDVVEELIRSTLAAS 172 LR + ++ LT + D+LR L+ G D ++ K P + ++S L + Sbjct: 78 CRQLRT---FSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRN 134 Query: 173 AAASEVSA 180 A + +A Sbjct: 135 ALVQQRTA 142 >gi|300312322|ref|YP_003776414.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 775 Score = 62.8 bits (151), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 19/161 (11%) Query: 13 PGAGSVFTIKLPAVLSDATPILLPLTPDSLH---------DLQPAEKGCA---------- 53 P G + + A++ D TP+L+ D L LQ ++ A Sbjct: 595 PRLGKIADVLAGALMEDGTPLLILDVADMLRTVEKLTSSGRLQTVDQDGAAPTTTAARKK 654 Query: 54 ILIVDDNLDAAQILGELLTMQGHEIRIAYDGPSALDIVKDFTPRIALLDIGLPIMDGYEV 113 +L+VDD+L ++ +LLT +G+++ +A DG + V+ + + + DI +P MDG E+ Sbjct: 655 VLVVDDSLTVRELERKLLTNRGYQVTVAVDGMDGWNAVRADSFDLVITDIDMPRMDGIEL 714 Query: 114 AGHLRAMPQLDGIRLIALTGYGQASDKLRSLQAGFDHHLVK 154 +R L + ++ ++ + D+ R L+AG DH+ K Sbjct: 715 VSLIRGAANLQSLPVMIVSYKDREEDRQRGLEAGADHYFTK 755 >gi|300313245|ref|YP_003777337.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 60.5 bits (145), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 7/123 (5%) Query: 51 GCAILIVDDNLDAAQILGELLTMQGHEIRIAYDGPSALDIVKDFTPRIALLDIGLPIMDG 110 G ILI +D + A+IL L G A DG AL++ P + LLDI +P ++G Sbjct: 37 GALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVLLDIQMPQVNG 96 Query: 111 YEVAGHLRAMPQLDGIRLIALTGYGQASDKLRSLQAGFDHHLVKPVD----IDVVEELIR 166 ++V +R Q D +I LT Q DKL L+ G D ++VKP + + VE ++R Sbjct: 97 WQVLSQIR---QRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLR 153 Query: 167 STL 169 +L Sbjct: 154 RSL 156 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.139 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 684,803 Number of extensions: 29859 Number of successful extensions: 194 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 210 Number of HSP's successfully gapped: 19 Length of query: 197 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 117 Effective length of database: 1,241,070 Effective search space: 145205190 Effective search space used: 145205190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)