BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0003.p
         (498 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311967|ref|YP_003776059.1| precorrin-6y methylase methyltr...   289   4e-79
gi|300311968|ref|YP_003776060.1| Mg-chelatase subunit ChlI prote...   248   1e-66

>gi|300311967|ref|YP_003776059.1| precorrin-6y methylase
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  289 bits (739), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 136/157 (86%), Positives = 146/157 (92%)

Query: 328 NADVVAGFDAVVNVVQSIIPATAEVVLMNYRDQVAQLDLVAAAHHAGKRCVVVFMGDIHF 387
           NADVVAGF+AVV+VV+ +IPA+A+VVLM YRDQVA+LD VAA HHAGKRCVVVFMGDIHF
Sbjct: 25  NADVVAGFNAVVDVVKDLIPASAQVVLMGYRDQVAKLDEVAALHHAGKRCVVVFMGDIHF 84

Query: 388 SGFQYLERVERACGHPVETLPGISSAQILASRAKVCFDETTFITFHRRGDLTPFKRHLVH 447
           SGFQYLERVERACGH VETLPGISSAQILAS+A+VCFDETTFITFHRRGDL PFKRHLVH
Sbjct: 85  SGFQYLERVERACGHRVETLPGISSAQILASKARVCFDETTFITFHRRGDLEPFKRHLVH 144

Query: 448 VLNDGRNAIVIPCPWDAARSFMPRHIAAYLXAAGRAP 484
           VLNDGRNAIVIPCPWDAARSFMPRHIA YL   G +P
Sbjct: 145 VLNDGRNAIVIPCPWDAARSFMPRHIATYLLQQGVSP 181


>gi|300311968|ref|YP_003776060.1| Mg-chelatase subunit ChlI protein
           [Herbaspirillum seropedicae SmR1]
          Length = 663

 Score =  248 bits (632), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/156 (79%), Positives = 133/156 (85%), Gaps = 2/156 (1%)

Query: 1   VLPPVERIAGCAFNCLPGQPAEHCAVCRSDAAAVPAIVSAAVPFVTLPLGATEDRVLGTL 60
           VLPP+ R+A CAFNC PGQPA  C +C  D A   A     +PFVTLPLGATEDRVLG+L
Sbjct: 54  VLPPIARVAACAFNCAPGQPAAACTLCNGDNAPAAAPAD--LPFVTLPLGATEDRVLGSL 111

Query: 61  DLQRALQGEKNALQPGLLAAAHRSILYIDEVNLLPDHLVDVLLDVAAMGVNSVQREGLSV 120
           DLQ+ALQG + A QPGLLAAAHR ILYIDEVNLL DHLVDVLLDVAAMG+N+VQREGLSV
Sbjct: 112 DLQQALQGGQRAFQPGLLAAAHRGILYIDEVNLLADHLVDVLLDVAAMGINAVQREGLSV 171

Query: 121 SHPARFTLIGTMNLEEGDLRPQLLDRFGLMVEVVAP 156
           SHPARFTLIGTMNLEEGDLRPQLLDRFGLMVEV AP
Sbjct: 172 SHPARFTLIGTMNLEEGDLRPQLLDRFGLMVEVNAP 207



 Score =  214 bits (544), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/154 (72%), Positives = 128/154 (83%), Gaps = 1/154 (0%)

Query: 171 GAVLQLQAGDLHGKVKAGKTANLILFVVDASGSMAAQRRMEAVKGAVLALLTDVYQRRDQ 230
           G  L +   DLH +V++G+ ANLI+FVVDASGSMAAQRRMEAVKGAVLALLTD YQRRDQ
Sbjct: 458 GERLAVSRADLHRQVRSGRGANLIVFVVDASGSMAAQRRMEAVKGAVLALLTDAYQRRDQ 517

Query: 231 VAVIGFRGDKASLLLAPTRSVDLAEQGLRELPTGGRTPLPHALQLALQTLEQSSGVAPPL 290
           +AVI FRG++A LLLAPTRS DLAEQGLRELPTGGRTPLPHALQLA Q L+Q+S  APPL
Sbjct: 518 LAVIAFRGEQAQLLLAPTRSADLAEQGLRELPTGGRTPLPHALQLAAQVLQQASPEAPPL 577

Query: 291 LVLLSDGKGNVALENG-GDPWRESLALADQLAAR 323
           LV+LSDGK NV+L    GD W ++L  AD LAA+
Sbjct: 578 LVILSDGKANVSLPGSHGDAWAQTLEAADMLAAQ 611


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,418,602
Number of extensions: 55006
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 3
Length of query: 498
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,198,455
Effective search space: 490168095
Effective search space used: 490168095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)