BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0002.p
         (149 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311968|ref|YP_003776060.1| Mg-chelatase subunit ChlI prote...   169   6e-44

>gi|300311968|ref|YP_003776060.1| Mg-chelatase subunit ChlI protein
           [Herbaspirillum seropedicae SmR1]
          Length = 663

 Score =  169 bits (429), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 88/121 (72%), Positives = 99/121 (81%), Gaps = 1/121 (0%)

Query: 2   QWQAEQDALRVRIAAAQALLPQVVLSDALLDLISHLCCEFEVASLRADIVMHKTARAFAA 61
           QWQ  QDALR ++A AQ LLP+VVL DA+L+LISHLCCEFEVASLRADIVMHKTARA AA
Sbjct: 233 QWQDRQDALRNQVAQAQRLLPEVVLDDAMLELISHLCCEFEVASLRADIVMHKTARAIAA 292

Query: 62  LDGRGQVTPEDVRAAAELVLPHRRRRKPFEQPGLDKDKLDDLMQQAAPPSEPQDSDGGQQ 121
           L  R +VTP+DVR AA LVLPHRRRRKPFEQ G+D+DKLDDL+ QA  P EP   D G+ 
Sbjct: 293 LQARSRVTPDDVREAALLVLPHRRRRKPFEQTGMDQDKLDDLIDQARTP-EPPAPDAGEG 351

Query: 122 S 122
           S
Sbjct: 352 S 352


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 426,126
Number of extensions: 14415
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,255,275
Effective search space: 90379800
Effective search space used: 90379800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)