BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0001.p
         (514 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311969|ref|YP_003776061.1| cobalamin biosynthesis protein ...   649   0.0  

>gi|300311969|ref|YP_003776061.1| cobalamin biosynthesis protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1397

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/467 (70%), Positives = 367/467 (78%), Gaps = 53/467 (11%)

Query: 88   GYLCELGAAQIRDGLHILGDEIGNLLLGLEGGYVPAGPSGSPTRGMAHILPTGRNFYSVD 147
             + CE    ++   LH   +EIGNLL GL GGY+PAGPSGSPTRGMAHILPTGRNFYSVD
Sbjct: 935  AFACE----ELVPRLHRTSEEIGNLLNGLRGGYIPAGPSGSPTRGMAHILPTGRNFYSVD 990

Query: 148  PRSVPSQSAWRVGQQLAREVLERHWRETGGHPESVAISIWGTSAMRTHGDDVAQILCLLG 207
            PRSVPSQSAWRVGQQLAREVL+RH RETG +PESVAISIWGTSAMRTHGDDVAQIL L+G
Sbjct: 991  PRSVPSQSAWRVGQQLAREVLQRHHRETGHYPESVAISIWGTSAMRTHGDDVAQILWLMG 1050

Query: 208  VRPVWRPGNRQVSGIEVVPLQELQRPRIDVTTRISGFFRDAFPQLIDLIDDAVNAVIALD 267
             RP+WR GNRQV+G+E+VPL+ELQRPRIDVTTRISGFFRDAFPQLI+LIDDAV   IA D
Sbjct: 1051 ARPLWRAGNRQVAGVELVPLEELQRPRIDVTTRISGFFRDAFPQLIELIDDAVQLAIAAD 1110

Query: 268  EPPEQNFVRKHYLQELGEWIGKGIGEDEAQERAAYRIFGAKPGSYGAGILPLIQEKNWQA 327
            EP   NFVRKHYL++L + +G G+G+ EA  +A+YR+FGAKPGSYGAGILPLIQEKNWQ 
Sbjct: 1111 EPETMNFVRKHYLRDLAQGMGAGLGQAEAAAQASYRVFGAKPGSYGAGILPLIQEKNWQD 1170

Query: 328  DADFAEAYINWGGYAYARKLGDKQGSDQRDAFRTRLSGVQVAA----------------- 370
             ADFAEAYINWGG+AY RK+   QG+DQRDAFR RL+GVQVA                  
Sbjct: 1171 QADFAEAYINWGGFAYGRKV---QGADQRDAFRQRLAGVQVALHNQDNHEHDIFDSDDYL 1227

Query: 371  -----------------------------GAQVRDLKQETLRVFRSRVVNPKWLDSIRRH 401
                                          A VRDLK+ETLRVFR+RVVNPKWL SI+RH
Sbjct: 1228 QYHGGMIATIRALSGQQPRHYFGDSHDPQRAAVRDLKEETLRVFRARVVNPKWLASIQRH 1287

Query: 402  GYKGGLELTATVDYLFGYDATAQVMDDWMYEQLAQTYAFDPGMQRFLEDANPWAQNAIAE 461
            GYKGGLEL+ATVDYLFGYDATAQV+DDWMY+QLA+TY FDP M++FLE+ANPWAQNAIAE
Sbjct: 1288 GYKGGLELSATVDYLFGYDATAQVLDDWMYQQLAETYGFDPAMRQFLEEANPWAQNAIAE 1347

Query: 462  RLLEAASRGMWKEPQAQTLEDLRQLYLKSETLLETRGETPRGRXRSR 508
            RLLEAASRGMW+ P AQTLE LRQLYL SETLLE RGET RG   ++
Sbjct: 1348 RLLEAASRGMWQAPDAQTLERLRQLYLHSETLLEARGETVRGSEHTK 1394



 Score = 92.8 bits (229), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 75/115 (65%), Gaps = 9/115 (7%)

Query: 1   VQQQIWELVKQTNLDSDLQMKLL---------HHDHDHDEEHGHHHHHGHAHGHHHHDHD 51
           +QQQIWELV+QTNLD+DLQ KLL         H      +   HHHHHGHAH HH H   
Sbjct: 655 LQQQIWELVRQTNLDTDLQYKLLHHDHDHDHDHDHDHGHDHDHHHHHHGHAHHHHDHGDH 714

Query: 52  DHDHDHSHDHSHEGELPEALNGMGGSDVAHLIEDLDGYLCELGAAQIRDGLHILG 106
            H          EGELP AL  + G+ VAHLIEDLDGYLCELGAAQIRDGLHILG
Sbjct: 715 AHHDHDHDHAHEEGELPHALTELDGAGVAHLIEDLDGYLCELGAAQIRDGLHILG 769


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,536,390
Number of extensions: 66364
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 3
Length of query: 514
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 425
Effective length of database: 1,198,455
Effective search space: 509343375
Effective search space used: 509343375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)