BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0006.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313869|ref|YP_003777961.1| superfamily II helicase [Herbas...   190   6e-50

>gi|300313869|ref|YP_003777961.1| superfamily II helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 829

 Score =  190 bits (482), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 94/135 (69%), Positives = 112/135 (82%), Gaps = 2/135 (1%)

Query: 1   VTLRPYQLHGVAWLQYLRAHHLAGILADDMGLGKTAQMLAHILIEKQSGRLDCPALVVLP 60
           +TLR YQ +GVAW+QYLR H LAGILADDMGLGKTAQ+LAH+LIEKQ+GRLD P LVV P
Sbjct: 350 LTLRDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVLIEKQAGRLDLPVLVVAP 409

Query: 61  TSLVFNWQAEARRMAPDLRVLALQGPQREDDFARMAG--FDIVLTTYPLVWRDLDVLARQ 118
           TSL+FNWQ EARR+ PDLRVL L G +R   F+ +A    D+VLT+YPL+WRDLD L  Q
Sbjct: 410 TSLLFNWQQEARRITPDLRVLLLHGQERAQHFSALASGQVDLVLTSYPLLWRDLDQLLPQ 469

Query: 119 QFHLLILDEAQTVKN 133
           ++H+L+LDEAQTVKN
Sbjct: 470 RWHMLVLDEAQTVKN 484


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 524,768
Number of extensions: 19828
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)