BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0005.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313869|ref|YP_003777961.1| superfamily II helicase [Herbas...   299   1e-82

>gi|300313869|ref|YP_003777961.1| superfamily II helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 829

 Score =  299 bits (765), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 146/202 (72%), Positives = 172/202 (85%)

Query: 1   VRRALERRGFTGSHVTIMDALLKLRQVCCDPFLLKSGKTPKTIERAKIEMLRDMLPSLAA 60
           VRRALERRG  GS VT+MDALLKLRQVCCDP+LLK G+ PK +ERAKI+ L D LP+L A
Sbjct: 605 VRRALERRGLGGSQVTVMDALLKLRQVCCDPYLLKQGRMPKGLERAKIDWLCDTLPALVA 664

Query: 61  EGRRVLVFSQFTEMLELIETELDALELPWLSLTGKTPSAARGEVVAQFQRKEVPIMLVSL 120
           EGRR+LVFSQFT ML+LI  +L+ L+LP+L LTG+T  AAR +V+A FQ+++ P+MLVSL
Sbjct: 665 EGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTGETEPAARADVIAGFQQEQTPLMLVSL 724

Query: 121 KAGGIGLNLTAADTVILADPWWNPAVEEQAIARAHRIGQDQAVLVYKLIIEGSIEERILE 180
           KAGG+GLNLTAADTV+L DPWWNPAVEEQAIARAHR+GQ + V VYKL+IEGSIEER+LE
Sbjct: 725 KAGGVGLNLTAADTVVLVDPWWNPAVEEQAIARAHRLGQQRQVFVYKLVIEGSIEERLLE 784

Query: 181 LQERKSVLAEGVLGSDGAVTPK 202
           LQ RKS LAEG+LG D A T K
Sbjct: 785 LQARKSALAEGMLGRDDATTVK 806


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 599,111
Number of extensions: 23105
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)