BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0007.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310199|ref|YP_003774291.1| hypotehtical protein [Herbaspir...   553   e-159

>gi|300310199|ref|YP_003774291.1| hypotehtical protein
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  553 bits (1426), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/355 (74%), Positives = 301/355 (84%), Gaps = 7/355 (1%)

Query: 14  RCS-SNRRPAPPPPPPXNPHFCKSALSRYTPQDFLSLVKRYQISFHEKHKGQLFCNDSSE 72
           RC+ +N    P      NPHFC+SALSRYTPQDF+ LVKR++I FHEKHKGQLFC+DS+E
Sbjct: 54  RCNFTNVGAGPQHYLSQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAE 113

Query: 73  EIIAMLKAECDSGNVEWRMPCGVAAIGKDGELFRLDTDAGEILALPKKPPRHVVIATGGL 132
           +IIAMLKAECD+GNV WRMPC V  +GK  E FR+ T AGEI A        +VIATGGL
Sbjct: 114 DIIAMLKAECDAGNVSWRMPCTVQEVGKSSEHFRIATSAGEIQAAS------LVIATGGL 167

Query: 133 SIPKIGATDFAYRIAKQFDIKLVETRPGLVPLTFDGAGWQPFVDLAGIALEVEVETGVKK 192
           SIPKIGATDFAYRIA+QFD+KLVETRPGLVPLTFDG  WQ   +LAGIALEVEVETG KK
Sbjct: 168 SIPKIGATDFAYRIARQFDLKLVETRPGLVPLTFDGKAWQSLTELAGIALEVEVETGAKK 227

Query: 193 ERGYFLEDLLFTHRGLSGPAILQISSFWQQGASLTLNLLPQIDVADTLIEGKTTLKKNLG 252
           ERG+FLEDLLFTHRGLSGPAILQISS+W+ G  LTLNLLPQ+DVA+TLI+GK T+KKNLG
Sbjct: 228 ERGHFLEDLLFTHRGLSGPAILQISSYWKPGTPLTLNLLPQLDVAETLIDGKGTIKKNLG 287

Query: 253 NLLGQWLPARLADGLLKANGFDGAARIADMPDKQLRQVGEALNRWTIKPNGSEGYRKAEV 312
           N+L QWLP RLA+G LK NGFD   RIADMPDK L+++G++LNRW I P+GSEGYRKAEV
Sbjct: 288 NILAQWLPNRLAEGWLKINGFDAGGRIADMPDKSLKKLGDSLNRWVILPSGSEGYRKAEV 347

Query: 313 TMGGIDTRELSQQSMMVNKVPGLHFIGEAVDVTGWLGGYNFQWAWASGVAAGQAI 367
           T+GG+DTRELSQQ+MM NKVPGLH IGEA+DVTGWLGGYNFQWAWASGVAAG A+
Sbjct: 348 TLGGVDTRELSQQTMMANKVPGLHVIGEAMDVTGWLGGYNFQWAWASGVAAGSAV 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,167,434
Number of extensions: 48120
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)