BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0006.p
         (406 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310198|ref|YP_003774290.1| hypothetical protein Hsero_0864...   682   0.0  

>gi|300310198|ref|YP_003774290.1| hypothetical protein Hsero_0864
           [Herbaspirillum seropedicae SmR1]
          Length = 370

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/370 (89%), Positives = 346/370 (93%)

Query: 37  MGIELELQLVNRRNYNLASDAVDLLTWIEPRELQKQIKLEMTQGMIELNSGIHTRVDELI 96
           MGIELELQLVNRRNYNLASDAVDLL WIEPR+LQKQIKLEMTQGMIELNSGIHTRVDELI
Sbjct: 1   MGIELELQLVNRRNYNLASDAVDLLNWIEPRDLQKQIKLEMTQGMIELNSGIHTRVDELI 60

Query: 97  EELKDLRGALNKGAQYLNIDVSGGGAHPFQHWNEQRITPSERFYHLHEKYGYLAKTFTVF 156
           EELK LR ALNKGAQYLNIDVSGGGAHPFQHWNEQRITPSERF++LHEKYGYLAKTFTVF
Sbjct: 61  EELKGLRAALNKGAQYLNIDVSGGGAHPFQHWNEQRITPSERFHYLHEKYGYLAKTFTVF 120

Query: 157 GQHIHIGVANGDDALYLTHAFSRFVPHFIALSAASPFYQGADTRFDSSRSNVVRAFPLSG 216
           GQHIHIGV NGDDALYLTH FSR+VPHFIALSAASPFYQGADT+FDSSRSNVVRAFPLSG
Sbjct: 121 GQHIHIGVENGDDALYLTHGFSRYVPHFIALSAASPFYQGADTKFDSSRSNVVRAFPLSG 180

Query: 217 TAPVQTRWAEFETYYDELLQMGIVASMKDFYWDIRPKPEYGTVEIRVCDTPLTIEHAAHL 276
           TAPV T+WAEFETYYDEL QMGI+ASMKDFYWDIRPKPEYGTVEIRVCDTPLTIEHAAHL
Sbjct: 181 TAPVHTKWAEFETYYDELHQMGIIASMKDFYWDIRPKPEYGTVEIRVCDTPLTIEHAAHL 240

Query: 277 GAYAQLLARWILTERPFVMRDDFYLLYQYNRFEASRFGLNGMLALHGETPATSSKLPIFE 336
           GAYAQLLARWILTERPFV+ DDFYLLYQYNRFEASRFGLNG LALHG TP+ S KLPI+E
Sbjct: 241 GAYAQLLARWILTERPFVVGDDFYLLYQYNRFEASRFGLNGQLALHGATPSQSRKLPIYE 300

Query: 337 HLLLQLQLLQPYVQNEVEELTLKRLRHMAHNRLSDAGWLRQAFAQRGSLNDMMRLSSELW 396
           HLL QLQLL+PYV NE E+ T+ RLR MAH+RLSDA WLRQ FAQRGSLNDMMRLSSELW
Sbjct: 301 HLLQQLQLLEPYVANEAEQQTILRLRRMAHDRLSDAAWLRQMFAQRGSLNDMMRLSSELW 360

Query: 397 MDRSPPSYFQ 406
           M   PP YFQ
Sbjct: 361 MGVEPPPYFQ 370


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,268,442
Number of extensions: 52754
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 319
Effective length of database: 1,207,925
Effective search space: 385328075
Effective search space used: 385328075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)