BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0005.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310197|ref|YP_003774289.1| transmembrane protein [Herbaspi...   639   0.0  

>gi|300310197|ref|YP_003774289.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/372 (84%), Positives = 348/372 (93%)

Query: 13  IAGHIVSKSPWVPRITGYLIVGFILGGGGLNWLSGDVLSVTNIFADIAVALVVYQLGRYV 72
           IAG++VSKSPWVPRITGYL+VGF+LG GG N LSG+VL VTNIFADIAVALVVYQLGRYV
Sbjct: 31  IAGYVVSKSPWVPRITGYLLVGFLLGSGGFNLLSGEVLKVTNIFADIAVALVVYQLGRYV 90

Query: 73  DIGWLRREKWLLATVVTSAVLCFTFVSVALLWFGTSNVLALLGGVWAIATAPAVVLVVLR 132
           DIGWLRREKWL+ TV  SAVLCF FVS+AL WFGT +V+ALLGGV AIATAPAVVLVVLR
Sbjct: 91  DIGWLRREKWLMITVAVSAVLCFGFVSIALTWFGTDSVMALLGGVMAIATAPAVVLVVLR 150

Query: 133 DLKAEGQVTRRLATMTALNNFVAILAAYALLPVIAHESGTPVLTLVEHTAYSLIGSLLLA 192
           DLKAEGQVTRRLA MTALNNFVA+LAAYALLPVIAHE+GTPV TL++HT YSL+GS +LA
Sbjct: 151 DLKAEGQVTRRLAAMTALNNFVAVLAAYALLPVIAHEAGTPVWTLIQHTLYSLVGSAILA 210

Query: 193 YLTYWLMMPLARLLGRQGSRQFVLVISVIALAIGVAHALHLPVMLTMLIFAIMSKNLDRQ 252
           YLTYWLMMPLARLLGR+ S QFVLVISVIALAIGVAHALHLPVMLTMLIFAI+SKNLDRQ
Sbjct: 211 YLTYWLMMPLARLLGRENSSQFVLVISVIALAIGVAHALHLPVMLTMLIFAILSKNLDRQ 270

Query: 253 YDLMELEFGVANELFVVMLFVTVGASMRLADLSMVGLSVLILIAARFVAMGCGVFLFARF 312
           +DLMELEFGVANELFVVMLFVTVGASM+L+DL ++G SVLILIAARF+AMG G+FLFARF
Sbjct: 271 FDLMELEFGVANELFVVMLFVTVGASMKLSDLGLLGFSVLILIAARFLAMGLGIFLFARF 330

Query: 313 ARMNWKQAGLLTLGTLPMTEAGLGLMQTISSLYPHTTSDVVPLLAGCLIVLELFGPVATQ 372
           ARMNW+QAGLLTLGTLPMTE G+GLMQT+SSLYPHTT++V+PLLAG ++VLE  GPVATQ
Sbjct: 331 ARMNWRQAGLLTLGTLPMTEVGVGLMQTVSSLYPHTTANVLPLLAGSMVVLEFLGPVATQ 390

Query: 373 FALIKSGESGRE 384
           FALIKSGESGRE
Sbjct: 391 FALIKSGESGRE 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,091,427
Number of extensions: 44711
Number of successful extensions: 240
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)