BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0002.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Her...   121   2e-29

>gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase
          [Herbaspirillum seropedicae SmR1]
          Length = 1158

 Score =  121 bits (304), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 63/72 (87%)

Query: 6  AIAAYEINGRPAEAAAFTAAACDPRQSVVVEACAGSGKTWLLVARMLRLLLAGAQPAELL 65
          A AAYE+NG   +AA FT AACDPR SVVVEACAGSGKTWLLVARMLRLLLAGAQ  ELL
Sbjct: 7  APAAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPELL 66

Query: 66 AITFTRKAAQEM 77
          AITFTRKAAQEM
Sbjct: 67 AITFTRKAAQEM 78



 Score = 68.2 bits (165), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 45/65 (69%)

Query: 104 RDARLTVWTDEALKARLYEISSLLGKGTATNQKRAVAIETLVSGEASAEQFVALASQFHD 163
           RDARL++W + AL AR  +++ LLG+G + NQ RAVAIE+ +S   + E F AL SQF D
Sbjct: 254 RDARLSLWEEHALVARASQLAILLGQGGSANQARAVAIESALSAGPALEHFDALYSQFFD 313

Query: 164 DSGKP 168
           D  KP
Sbjct: 314 DKDKP 318


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 354,799
Number of extensions: 8856
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)