BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0001.p
         (355 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310195|ref|YP_003774287.1| inactivated superfamily I helic...   461   e-131

>gi|300310195|ref|YP_003774287.1| inactivated superfamily I helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 924

 Score =  461 bits (1186), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/341 (65%), Positives = 259/341 (75%), Gaps = 1/341 (0%)

Query: 15  SRQHQQLRDLTELLCANREVVLCWQTHKDGEPNPKSPWLERLELCLAKAGMEPLRELRHD 74
           +RQ QQLRDL ELLC N EVVLCWQTH+DGEPNP SPW+ERLEL LA+ G  PL+ L   
Sbjct: 583 TRQRQQLRDLVELLCINPEVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELP 642

Query: 75  LPLHELLAAPSTMPAPSAAELTPARLSASAYNRLVACPYQFFAQHMLRVNVMDELSDMPE 134
            P+ +L A PS+MPAPSA +L P  LSAS +   +ACPYQFFAQ MLRV VMDELS+MPE
Sbjct: 643 PPVQQLRALPSSMPAPSAPDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELSEMPE 702

Query: 135 KRDYGGWLHEILMKYHEALRDAKTPVEQRAALLATISDEVFGKAIREHPAALGYEARWRK 194
           KRDYG WLHEIL KYH  LRD  TP+  RAALLA  S+EVF + ++ HPAAL + ARW+K
Sbjct: 703 KRDYGSWLHEILYKYHAHLRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQK 762

Query: 195 VMPAYLVWANERESLGWHFVLGELPLQHALAWPDGGIELYGRLDRVDENAEGERAVLDYK 254
           VMPAYL+WANERE+ GW F  GE      L W DGGIELYGRLDRVD N +G+RA+LDYK
Sbjct: 763 VMPAYLLWANEREAEGWQFAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYK 822

Query: 255 TSSLPSLAAKLRNAEDHQLPFYGLLSGQTMAAAHYVALEPYRD-KTGDVAAPDFEAQQQA 313
           T S  SL  K++  +DHQL FYGLL+G  +  AHYVALE   D KTGD AAPDF  +Q+ 
Sbjct: 823 TRSAASLRQKVKEDDDHQLAFYGLLAGGVIEHAHYVALELGPDKKTGDAAAPDFARRQKM 882

Query: 314 LQQQIITVMQAIGNDAPLPANGIESVCQYCEVRGLCRKGVW 354
           LQQQI T MQA+ + A LPANGIESVCQYCE+RGLCRKG W
Sbjct: 883 LQQQITTTMQAVAHGAALPANGIESVCQYCEMRGLCRKGAW 923


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,136,758
Number of extensions: 47645
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,212,660
Effective search space: 326205540
Effective search space used: 326205540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)