BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0003.p
         (370 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311819|ref|YP_003775911.1| glycogen synthase [Herbaspirill...   470   e-134

>gi|300311819|ref|YP_003775911.1| glycogen synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 529

 Score =  470 bits (1209), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/369 (60%), Positives = 278/369 (75%), Gaps = 5/369 (1%)

Query: 1   VHANDWHAGLIPFLLKTAGLNHVASMLTIHNLAFQGNYDWTLAGQLGLAHDAQAMSSLEY 60
           VHANDWHAGLIP LLK  GL+H+ +MLTIHNLAFQGN+    A Q+G+         +EY
Sbjct: 138 VHANDWHAGLIPCLLKLRGLDHIGTMLTIHNLAFQGNFALESAEQIGIPQHLLTGDGVEY 197

Query: 61  WGKISFLKAGLQHADCITTVSKTYAEEILTPRFGYGMEGVLNERRAALRAIPNGIDSAVW 120
           WGK+SFLKAG++ +DC++TVS+ YA EI+TPRFG GM+G+L+ R+  LRAIPN ID+ +W
Sbjct: 198 WGKLSFLKAGIRFSDCVSTVSRNYAHEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELW 257

Query: 121 NPEHDPLLRHSFSVDDMRGKTLSKCDLQDMFGLLPVDPFAPIIGIGSRMSHQKMADVVLQ 180
           NP  DPL+  +FSV +M+GK   K DLQ +FGL PVDPFAP++G+GSR+SHQKMADVV++
Sbjct: 258 NPADDPLIARNFSVGNMKGKAACKRDLQKLFGL-PVDPFAPVMGMGSRLSHQKMADVVIE 316

Query: 181 TLPQVLDRRERMQVVVLGCGDRSYEEGFLDLAHRYPGRVGVHIGYDEERAHALHAGCDML 240
            LP +++R  RMQ+VVLGCGD  YE+  L LA RY GR+ VHIGYDE RAHALHAG DML
Sbjct: 317 ALPGIMERHPRMQMVVLGCGDHDYEKSLLALAQRYAGRIAVHIGYDERRAHALHAGSDML 376

Query: 241 LHPSRFEPFGLTPLYAMRYGTIPIASRVGGLTDTIADVGMHGPAGRGASGVLFDGETARD 300
           LHP+RFEPFGLTPLYAMRYG IPI SRVGGL DT+ D  +       A+GVLFDG+ A D
Sbjct: 377 LHPTRFEPFGLTPLYAMRYGAIPIGSRVGGLVDTVCDADLD---AERATGVLFDGDRASD 433

Query: 301 MEAAIERAFALHQDAGAWRAMQRNAMHTDFDWQTAAAAYVDAYAAIAATEAKPLFA-RKA 359
           MEAA++RAFAL+ D   W++MQRNAM  D DW     AY+DAYA +A    +PLFA R  
Sbjct: 434 MEAAVDRAFALYADNERWQSMQRNAMSIDCDWAGPTRAYIDAYAHVADMAVRPLFAPRPQ 493

Query: 360 PDARVALEQ 368
           P  R A++ 
Sbjct: 494 PVERPAVQH 502


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,234,446
Number of extensions: 55424
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 283
Effective length of database: 1,207,925
Effective search space: 341842775
Effective search space used: 341842775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)