BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0015.p (214 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 169 2e-43 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 143 1e-35 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 133 1e-32 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 121 5e-29 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 120 8e-29 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 169 bits (427), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 98/191 (51%), Positives = 137/191 (71%) Query: 3 KKLQPILEGEQELSLFKKIETQRSLYVVARDQMRKAKAAGDLEEANRLLESAFMPRANDL 62 K+++ +L +E +LF+KI R LY+ +RD++ KAKAAG+ EEA R+L+ F+P A Sbjct: 101 KQVEALLSTPEEKALFQKIGELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAY 160 Query: 63 KDALQNLLTMQRKSIDDTAADIEHMAQTGRTLLIVLGVLILLFGVSSAWYLTVNITRPLT 122 +D ++ L+ QRK +DDTA +I+ +A RTL++VL LILL G+ A YLT+ IT+PL Sbjct: 161 QDTMRKLVDFQRKEMDDTAREIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLH 220 Query: 123 VAVGVARSIADGDLTARIEVRSKDEVGMLLSALKDMNGSLLNIVSDVRGGTDAIATASSQ 182 AV V+R +A+GDL++ I V S+DE G LL +LKDMN SL IVS+VR GTD I+TASS+ Sbjct: 221 RAVDVSRCVAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSE 280 Query: 183 IASGNLDPXRR 193 IA+GNLD R Sbjct: 281 IAAGNLDLSSR 291 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 143 bits (361), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/205 (40%), Positives = 121/205 (59%) Query: 1 LLKKLQPILEGEQELSLFKKIETQRSLYVVARDQMRKAKAAGDLEEANRLLESAFMPRAN 60 L K+++ + +E LF ++ R+ Y R + K AGD A + ++ + + Sbjct: 96 LQKEVEAAITDAEEKRLFDEVGKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMD 155 Query: 61 DLKDALQNLLTMQRKSIDDTAADIEHMAQTGRTLLIVLGVLILLFGVSSAWYLTVNITRP 120 D D + Q++ ID TAA I ++GR++L+ LG + ++ G + AW LT +ITRP Sbjct: 156 DYADGVLRYADFQKQVIDQTAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRP 215 Query: 121 LTVAVGVARSIADGDLTARIEVRSKDEVGMLLSALKDMNGSLLNIVSDVRGGTDAIATAS 180 L AV +A ++A GDLT+RI+ S+DE G LL+ALK MNG+LL+IV VR GT+ I TAS Sbjct: 216 LNQAVTIAETVAAGDLTSRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTAS 275 Query: 181 SQIASGNLDPXRRAIAAAAGCESGA 205 +IA+GNLD R A A E A Sbjct: 276 REIATGNLDLSARTEAQAGSLEETA 300 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 133 bits (334), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 121/204 (59%) Query: 2 LKKLQPILEGEQELSLFKKIETQRSLYVVARDQMRKAKAAGDLEEANRLLESAFMPRAND 61 LK ++ +L E+E +F I R ++ RDQ+ AK GD + L + ++ A Sbjct: 98 LKDVEQLLASEEEKKMFAAINVARKQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKS 157 Query: 62 LKDALQNLLTMQRKSIDDTAADIEHMAQTGRTLLIVLGVLILLFGVSSAWYLTVNITRPL 121 +DA++ LL +R ID +A I+ A + + +++L V+ILL G++ A LT +ITRP+ Sbjct: 158 TQDAMRALLDFERARIDQISAQIQQDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPV 217 Query: 122 TVAVGVARSIADGDLTARIEVRSKDEVGMLLSALKDMNGSLLNIVSDVRGGTDAIATASS 181 VA+ +++ +A GDLT+R + +DE+G L+++L+ M+ L +VS VR G D+IA AS Sbjct: 218 HVALAISQRVAAGDLTSRAQAMGRDELGQLVASLQGMSERLHGVVSTVRHGADSIAMASG 277 Query: 182 QIASGNLDPXRRAIAAAAGCESGA 205 +IA+GNLD R A E A Sbjct: 278 EIANGNLDLSARTEEQAGALEQTA 301 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 121 bits (303), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 67/113 (59%), Positives = 79/113 (69%) Query: 93 TLLIVLGVLILLFGVSSAWYLTVNITRPLTVAVGVARSIADGDLTARIEVRSKDEVGMLL 152 T LI G + L+ V AW+L NITRPL +AV +AR +A GDLTARIEVRS+DE G LL Sbjct: 193 TTLIGGGAIALMLAVLLAWWLANNITRPLALAVQLARRVASGDLTARIEVRSRDETGALL 252 Query: 153 SALKDMNGSLLNIVSDVRGGTDAIATASSQIASGNLDPXRRAIAAAAGCESGA 205 ALKDMN SL+ IVS VR GT+ IATASS+IA+GNLD R A+ E A Sbjct: 253 GALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSLEETA 305 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 120 bits (301), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 78/194 (40%), Positives = 109/194 (56%), Gaps = 1/194 (0%) Query: 12 EQELSLFKKIETQRSLYVVARDQMRKAKAAGDLEEANRLLESAFMPRANDLKDALQNLLT 71 E + L K ET++S Y R Q+ K +++GD + A +L+ S +P L L Sbjct: 110 EAKAKLDKVTETRKS-YAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSD 168 Query: 72 MQRKSIDDTAADIEHMAQTGRTLLIVLGVLILLFGVSSAWYLTVNITRPLTVAVGVARSI 131 Q+K +D + E +T R ++++ GVL F AW ++ +ITRPL+ AV VA ++ Sbjct: 169 TQQKLMDQSVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETV 228 Query: 132 ADGDLTARIEVRSKDEVGMLLSALKDMNGSLLNIVSDVRGGTDAIATASSQIASGNLDPX 191 A GDLTA I S DE G LL AL MN L IV +VR GTD++ TAS+QIA+GNLD Sbjct: 229 AAGDLTAVIAAHSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLS 288 Query: 192 RRAIAAAAGCESGA 205 R A+ E A Sbjct: 289 SRTEEQASALEETA 302 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 512,328 Number of extensions: 16482 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 54 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 54 Length of query: 214 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 133 Effective length of database: 1,236,335 Effective search space: 164432555 Effective search space used: 164432555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)