BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0013.p
         (146 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313809|ref|YP_003777901.1| hypothetical protein Hsero_4527...   104   4e-24

>gi|300313809|ref|YP_003777901.1| hypothetical protein Hsero_4527
           [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score =  104 bits (259), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 2/131 (1%)

Query: 5   KSLYERVLHAVLFEVVALLLCAPVMSWLLGVSFAHAGALTLMISLVAMTWNVIFNTLFDR 64
           +    ++++A LFE +A++     +S L G    HA A  +  S +A  WN IFN LF+R
Sbjct: 2   QGFKRKLVYACLFEALAIVFTTVGLSVLGGHDSGHATAAAVASSTIAFVWNFIFNGLFER 61

Query: 65  LERRWKASAAERRFAVRIAHAVMFEAGLILAVVPMAAWWLDIGLIEAFVLDIGLVLFFLP 124
            E R       R FA R AHA+ FE GL+L +VP+ AWWLDI L  AFVLD+GL++FF+ 
Sbjct: 62  WEARQPRRG--RNFARRAAHAIGFEGGLVLMLVPLFAWWLDISLWNAFVLDLGLIVFFMI 119

Query: 125 YTLVFNWCYDK 135
           YT +FN  +D+
Sbjct: 120 YTYLFNLLFDR 130


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.334    0.141    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 467,150
Number of extensions: 18589
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,255,275
Effective search space: 86613975
Effective search space used: 86613975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 126 (53.1 bits)