BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0008.p (281 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 268 3e-73 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 231 6e-62 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 184 5e-48 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 169 2e-43 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 102 3e-23 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 268 bits (686), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 163/263 (61%), Positives = 197/263 (74%), Gaps = 3/263 (1%) Query: 1 MNFFANMNISKRLNLGFAIILFSAIAVIALSIWRLHTVAETTQAMMEKPLAKERLVSDWY 60 M +FANM I +RL LGFA+IL +A V+ALSIWRL +A T MM +PL KERLVSDWY Sbjct: 1 MRYFANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWY 60 Query: 61 RTIHTSVRRTTAIAKSADPSLSAFFAEDAATATKLSNEQQKTLEGLLSSDKEKALFAQLA 120 RTIHTSVRRTTAIAKS+DPSL+AFFA+DAA A+++S EQQK +E L+ SD+EKA+F +L Sbjct: 61 RTIHTSVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLG 120 Query: 121 TVRKSYIAARDAISKAKADGNVEEAARVLAKDFPAAAKGYLDSLQQLLDLQRSSIDDIAA 180 VRK YI RDAISKAKA+G EEAA++LA F A KGYLD LQQLL LQR++ID +AA Sbjct: 121 EVRKDYIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAA 180 Query: 181 GIHDHYTRSRNLLIACGALLFIAGWVFAWRLALSIIRPLKQALGIAETVAAGDLSSHID- 239 I Y SRNL++A L + GW+FA LAL I RPL+QA+ +AE VAAGDL+ ID Sbjct: 181 HIQTVYRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDE 240 Query: 240 --TSRKDETGKLLLALKTMNDNL 260 +R DETGKL+ AL M NL Sbjct: 241 RLAARGDETGKLMHALHAMTGNL 263 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 231 bits (588), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 121/260 (46%), Positives = 173/260 (66%) Query: 1 MNFFANMNISKRLNLGFAIILFSAIAVIALSIWRLHTVAETTQAMMEKPLAKERLVSDWY 60 MN NMNI +RL LGFA+IL +I + + +WRL VA+ T+ MM +PL ERL++DWY Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 61 RTIHTSVRRTTAIAKSADPSLSAFFAEDAATATKLSNEQQKTLEGLLSSDKEKALFAQLA 120 + +RRT AIAKS+DP+L +FA + A ++K S E QK +E LLS+ +EKALF ++ Sbjct: 61 TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120 Query: 121 TVRKSYIAARDAISKAKADGNVEEAARVLAKDFPAAAKGYLDSLQQLLDLQRSSIDDIAA 180 +RK Y+++RD I+KAKA GN EEA R+L + F A Y D++++L+D QR +DD A Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAR 180 Query: 181 GIHDHYTRSRNLLIACGALLFIAGWVFAWRLALSIIRPLKQALGIAETVAAGDLSSHIDT 240 I +SR L++ L+ + G VFA L L I +PL +A+ ++ VA GDLSS I Sbjct: 181 EIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAV 240 Query: 241 SRKDETGKLLLALKTMNDNL 260 + +DETG+LL +LK MN +L Sbjct: 241 TSRDETGQLLQSLKDMNQSL 260 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 184 bits (468), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 99/258 (38%), Positives = 154/258 (59%) Query: 3 FFANMNISKRLNLGFAIILFSAIAVIALSIWRLHTVAETTQAMMEKPLAKERLVSDWYRT 62 ++ I RL GFA++L ++ V A+ IWRL TVA TQ MM+ PL ERLVS W Sbjct: 1 MIKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTL 60 Query: 63 IHTSVRRTTAIAKSADPSLSAFFAEDAATATKLSNEQQKTLEGLLSSDKEKALFAQLATV 122 + +++RTT + KS DP L AF A++AA ++K S + K +E LL+S++EK +FA + Sbjct: 61 LLIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVA 120 Query: 123 RKSYIAARDAISKAKADGNVEEAARVLAKDFPAAAKGYLDSLQQLLDLQRSSIDDIAAGI 182 RK ++ RD I AK G+ + + K + AK D+++ LLD +R+ ID I+A I Sbjct: 121 RKQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQI 180 Query: 183 HDHYTRSRNLLIACGALLFIAGWVFAWRLALSIIRPLKQALGIAETVAAGDLSSHIDTSR 242 + S++ ++ ++ + G FA L SI RP+ AL I++ VAAGDL+S Sbjct: 181 QQDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMG 240 Query: 243 KDETGKLLLALKTMNDNL 260 +DE G+L+ +L+ M++ L Sbjct: 241 RDELGQLVASLQGMSERL 258 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 169 bits (428), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 98/255 (38%), Positives = 140/255 (54%) Query: 6 NMNISKRLNLGFAIILFSAIAVIALSIWRLHTVAETTQAMMEKPLAKERLVSDWYRTIHT 65 N+ I RL +GF +L ++AL +WRL ++ + T M L KER W+ I Sbjct: 3 NLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAIKE 62 Query: 66 SVRRTTAIAKSADPSLSAFFAEDAATATKLSNEQQKTLEGLLSSDKEKALFAQLATVRKS 125 + RT A+ KS D + A+F + + ++ QK +E ++ +EK LF ++ +R + Sbjct: 63 NGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLRAA 122 Query: 126 YIAARDAISKAKADGNVEEAARVLAKDFPAAAKGYLDSLQQLLDLQRSSIDDIAAGIHDH 185 Y A R +I K G+ A + Y D + + D Q+ ID AA I+ Sbjct: 123 YRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAINRD 182 Query: 186 YTRSRNLLIACGALLFIAGWVFAWRLALSIIRPLKQALGIAETVAAGDLSSHIDTSRKDE 245 Y R++L+A GA+ + G AW L SI RPL QA+ IAETVAAGDL+S ID+S +DE Sbjct: 183 YRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDE 242 Query: 246 TGKLLLALKTMNDNL 260 TGKLL ALKTMN NL Sbjct: 243 TGKLLAALKTMNGNL 257 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 102 bits (255), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/271 (30%), Positives = 134/271 (49%), Gaps = 26/271 (9%) Query: 4 FANMNISKRLNLGFAIILFSAIAVIALSIWRLHTVAETTQAMMEKPLAKERLVSDWYR-- 61 F N++I+ RL + F+I++ ++AL + RL A+ +A+ + +V+D Y+ Sbjct: 3 FNNLSIATRLAIAFSILILVIAGIVALGLARL---ADINKAL-------DLVVNDRYKKI 52 Query: 62 -TIHTSVRRTTAIAKS-------ADPSLSAFFAEDAATATKLSNEQQK---TLEGLLSSD 110 I+T + +A S DP A A + T LS E K L L+++ Sbjct: 53 AIINTISGKVDDVAISLRNQLLMTDP---AQIAAEQKTIESLSAENTKLYDELTRLVANP 109 Query: 111 KEKALFAQLATVRKSYIAARDAISKAKADGNVEEAARVLAKDFPAAAKGYLDSLQQLLDL 170 + KA ++ RKSY A R I K ++ G+ + A +++ + K Y L +L D Sbjct: 110 EAKAKLDKVTETRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDT 169 Query: 171 QRSSIDDIAAGIHDHYTRSRNLLIACGALLFIAGWVFAWRLALSIIRPLKQALGIAETVA 230 Q+ +D Y +R +++ G L AW ++ SI RPL +A+ +AETVA Sbjct: 170 QQKLMDQSVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVA 229 Query: 231 AGDLSSHIDTSRKDETGKLLLALKTMNDNLQ 261 AGDL++ I DETG+LL AL MN L+ Sbjct: 230 AGDLTAVIAAHSNDETGRLLQALAAMNQKLK 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 649,883 Number of extensions: 21062 Number of successful extensions: 187 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 175 Number of HSP's successfully gapped: 32 Length of query: 281 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 197 Effective length of database: 1,222,130 Effective search space: 240759610 Effective search space used: 240759610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)