BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0006.p (438 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310848|ref|YP_003774940.1| two component sensor histidine ... 249 3e-67 gi|300313666|ref|YP_003777758.1| two component sensor histidine ... 226 4e-60 gi|300313829|ref|YP_003777921.1| sensor histidine kinase [Herbas... 183 3e-47 gi|300311468|ref|YP_003775560.1| oxidative stress resistance two... 120 3e-28 gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ... 95 1e-20 >gi|300310848|ref|YP_003774940.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 465 Score = 249 bits (637), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 161/448 (35%), Positives = 241/448 (53%), Gaps = 30/448 (6%) Query: 15 RLALILCVGLVLAQTLSFWLTLTERDQATTNVMMGYIEREAASSVALLDHLPPAERPQWL 74 R+ +L G+V+A + WL ER + ++ V +D++PPA+RP L Sbjct: 11 RIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDNIPPAQRPIVL 70 Query: 75 PRLARRSYEF--------ILGPGITGTPPDARLSRMVAKSIAD--GIGTEYALTVNAVPG 124 + +E +GP + +P + L+ M+ + + I + + Sbjct: 71 QAASNFGFEARMVEDMNDAIGPDASPSPSTSPLTEMLQARLGEDRKIAVQRESECPPLRT 130 Query: 125 DKERMQ-------VHLKLSD-----------GTPLTIDMRPMSGVPLSPWLPLVLALQLI 166 D R +++ L D G P + R G P S + + L L+ Sbjct: 131 DDARAPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPASLFGLQYILLFLV 190 Query: 167 VLAACCWLAVRLATRPLHALAVAADTLGPDLKAARLPEDGPSEVARASKAFNAMQDRIAT 226 ++A WL R+ATRP+ LA AA LG D+ A L E GP+E+ +A+ AFNAMQ RI Sbjct: 191 LIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHAFNAMQARIRR 250 Query: 227 YMTERMQILAAISHDLQTPITRMRLRVDVMDESPQHAKLQQDLQEMETLVKEGVTYARTL 286 + R +LAAI+HDLQTP+TRMRLR++ + + KL DL M +V+EG+ AR++ Sbjct: 251 QIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHGMVREGLDLARSM 310 Query: 287 HGAAEAPCRIDPDALLDSLVCDYVDAGKEVSLHGAIGTALVTRPQALKRILGNLVDNALK 346 ++E +D D+LLDS+ D DAG++V+L G+ ++ +P AL+R L NL+DNA K Sbjct: 311 D-SSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCLTNLIDNACK 369 Query: 347 FGGAAELEVSAQADGAVTIAVLDRGPGIPADSLEAVFEPFVRLEASRNRNTGGTGLGLAI 406 +G +A + ++ + + I + D+GPGIP LEAVFEPF RLEASR+R+TGGTGLGL I Sbjct: 370 YGKSARVSIALEQQ-KIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTGGTGLGLTI 428 Query: 407 ARQLTLAMDAKLSLHNRTGGGLEARLML 434 A + +L L N GGLE L L Sbjct: 429 ALNIAENHHGQLRLRNLAEGGLEVLLEL 456 >gi|300313666|ref|YP_003777758.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 479 Score = 226 bits (575), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 163/469 (34%), Positives = 237/469 (50%), Gaps = 47/469 (10%) Query: 8 WPRTLFARLALILCVGLVLAQTLSFWLTLTERDQATTNVMMGYIEREAASSVALLDHLPP 67 WP+TL RLALIL G++ AQ L+ + R + A +V +LD P Sbjct: 14 WPQTLSGRLALILVAGMLAAQMLTGTIWYDMRYGTAMEMPTRLAAAHLADAVLILDDAPA 73 Query: 68 AERPQWLPRLARRSYEFILGP-------GITGTPPDARLSRMVAKSIADGIGT------- 113 +R L R + L + G P + + + + D GT Sbjct: 74 TQRQALAHSLTRAQFVLSLPDVVDRADLAVPGLAPASSPTTHADQGVVDLFGTVLQQHAG 133 Query: 114 ---------------------EYALTVNAVPGDKERMQVHLKLSDGTPLTIDMRP----M 148 + L + P + R+ V LK DG+ L D+ M Sbjct: 134 PRPWKMLQLGLDDQHANAESSWWTLLRDEFPHGRFRVLVTLK--DGSWLQADIEEGQAGM 191 Query: 149 SGVPLSP---WLPLVLALQLIVLAACCWLAVRLATRPLHALAVAADTLGPDLKAARLPED 205 S P S + + AL++ + W+AVRLA +PL +A AA+ LG ++++A L D Sbjct: 192 STAPHSAAFDYFMRIYALRIFAVVLIAWMAVRLAMKPLQVMAEAAEKLGGNIRSAPLATD 251 Query: 206 GPSEVARASKAFNAMQDRIATYMTERMQILAAISHDLQTPITRMRLRVDVMDESPQHAKL 265 GP EV+ A++AFNAMQ RI + ER + LAA+SHDL++PITRM+LR +++ + K Sbjct: 252 GPLEVSTAAQAFNAMQRRIIDNIAERTRFLAAVSHDLRSPITRMKLRTEMLPDERGKEKF 311 Query: 266 QQDLQEMETLVKEGVTYARTLHGAAEAPCRIDPDALLDSLVCDYVDAGKEVSLHGAIGTA 325 ++DL EM+ L+ + + + E P ID D+LL+SL D + G EV+L G Sbjct: 312 RKDLDEMDALISATLNVVQDID-VQERPQLIDLDSLLESLRTDQAEVGGEVTLSGH-AAP 369 Query: 326 LVTRPQALKRILGNLVDNALKFGGAAELEVSAQADGAVTIAVLDRGPGIPADSLEAVFEP 385 L P++L+R L NLV+NA+++G A +++ AD V I V D GPGIP LE V EP Sbjct: 370 LQGYPRSLRRCLQNLVENAVRYGQRARVQLQDDAD-QVCIRVDDDGPGIPEALLERVQEP 428 Query: 386 FVRLEASRNRNTGGTGLGLAIARQLTLAMDAKLSLHNRTGGGLEARLML 434 F RLE SRN TGG GLGL+IA + A + L NR GGGL +++ Sbjct: 429 FYRLERSRNAGTGGFGLGLSIAATVVQAHRGVMKLVNRPGGGLRVEILI 477 >gi|300313829|ref|YP_003777921.1| sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 478 Score = 183 bits (464), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 148/478 (30%), Positives = 238/478 (49%), Gaps = 52/478 (10%) Query: 9 PRTLFARLALILCVGLVLAQT---LSFWLTLTERDQATTNVMMGYIEREAASSVALLDHL 65 P +L RL++++ G+++ Q L + + L + +A T ++ AAS++ L Sbjct: 2 PDSLLGRLSVVMIFGVLVTQVAGGLIWAVQLRSKSEAETRTAAQHLAHSAASAIRYFMTL 61 Query: 66 PPAERPQWLPRLARRS-YEFILGPGITG----TPPDARLSRM------------------ 102 PP RP + +L F + + + D+RL+++ Sbjct: 62 PPNYRPLMIQQLREMGGTRFFINANSSAVAVKSIGDSRLAKLAIDVAAQTLREDLPFLPE 121 Query: 103 --VAKSIADGIGTEY-ALTVNAVPGDKERMQVHLKLSDGTPLTIDMRPMSG--VPLSPWL 157 +A + DG+ LTVN +P + + + K + L I M+ SG + L+ + Sbjct: 122 ARLAFAWPDGLPVASDGLTVNDLPDNWVQHILMTKPNSAPVLVIQMQVESGRWIYLAALM 181 Query: 158 P---------------LVL-ALQLIVLAACCWLAVRLATRPLHALAVAADTLGPDLKAAR 201 P LVL L L + L VR TRPL ALA AA+ G Sbjct: 182 PNPYFLDSDNPLWLDRLVLQGLSLAAILLLTILVVRWTTRPLAALADAAEAFGKGETVPS 241 Query: 202 LPEDGPSEVARASKAFNAMQDRIATYMTERMQILAAISHDLQTPITRMRLRVDVMDESPQ 261 LPE G E + ++AF+ M++RI Y+ +R ++ +ISHDL+TPITR++LR ++MD+ Sbjct: 242 LPETGSREYVKTARAFSGMRERIKRYLEDRERLFVSISHDLRTPITRLKLRTELMDDDAM 301 Query: 262 HAKLQQDLQEMETLVKEGVTYARTLHGAAEAPCRIDPDALLDSLVCDYVDAGKEVSLHGA 321 DL E++ +VK + + E + DAL+ ++ D AG E++ + Sbjct: 302 RTDFHDDLDELDMMVKGALQSVKD-SDIHENRTEVRLDALVLRMIRDARLAGHEIAFTPS 360 Query: 322 IGTALVTRPQALKRILGNLVDNALKFGGAAELEV--SAQADGA-VTIAVLDRGPGIPADS 378 G ++ +P ALKR +GNL DNAL +G E+ + S A+G V I + D GPG+P D+ Sbjct: 361 -GINVIAKPLALKRAIGNLFDNALYYGQKVEISIRPSPGAEGDLVEIEIRDHGPGVPEDA 419 Query: 379 LEAVFEPFVRLEASRNRNTGGTGLGLAIARQLTLAMDAKLSLHNRTGGGLEARLMLTA 436 + +F+P+VRLE R +N+GG GLGL I+R + A +L L N GGL A ++L A Sbjct: 420 MGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLMATIILPA 477 >gi|300311468|ref|YP_003775560.1| oxidative stress resistance two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 455 Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 132/244 (54%), Gaps = 15/244 (6%) Query: 202 LPEDGPSEVARASKAFNAMQDRIATYMTERMQILAAISHDLQTPITRMRLRVDVMDESPQ 261 LPE GP+E+ A+++FN M + ++R ILA ISHDL+TP+ RM+L V++ + S + Sbjct: 207 LPESGPTEIEEANRSFNQMVADLNRIESDRALILAGISHDLRTPLARMQLEVEMANLSDE 266 Query: 262 -HAKLQQDLQEMETLVKEGVTYARTLHGAAEAPCRIDPDALLDSLVCDYVDAGKEVSLHG 320 + DL +M++++ + + YA+ ++ + D L D V ++ +H Sbjct: 267 ARDGMHSDLAQMDSIIGQFLDYAKPFDTSSLETIDL-ADVLQD--VAGNASRLSDIRVHT 323 Query: 321 AI--GTALVTRPQALKRILGNLVDNALKFG-----GAAELEVSAQADG-AVTIAVLDRGP 372 I T + L R+ NLV+NA ++G AE+++ ++ +G V + V D GP Sbjct: 324 QITPDTQVAGNGTELARVFSNLVENARRYGKTEGTDCAEIDIRSRIEGHQVVVEVADHGP 383 Query: 373 GIPADSLEAVFEPFVRLEASRNRNTGGTGLGLAIARQLTLAMDAKLSL--HNRTGGGLEA 430 G+P + E + PF RL+ +R + G+GLGLAI ++ L + KL L H T GL Sbjct: 384 GVPVNECERLLRPFTRLDTARGQ-ANGSGLGLAIVNRIVLKHNGKLLLKGHEETRSGLLV 442 Query: 431 RLML 434 ++ L Sbjct: 443 QITL 446 >gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 444 Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 92/295 (31%), Positives = 137/295 (46%), Gaps = 36/295 (12%) Query: 168 LAACCWLAVRLATRPLHALAVAADTLGPDLKAAR-LPEDG-PSEVARASKAFNAMQDRIA 225 + W+AV P+ AA+ D+ + + L + G P E+ + A N + R+ Sbjct: 153 IGVLSWVAVSRGLAPVRK--AAAEVAARDMNSLQPLADVGMPQEIQPLTHALNDLLARLK 210 Query: 226 TYMTERMQILAAISHDLQTPITRMRLR-------VDVMDESPQHAKLQQDLQEMETLVKE 278 + +A +H+L+TP+T +RL+ VD + A L+ L+ LV + Sbjct: 211 HATETQRAFVADAAHELRTPLTALRLQTQLAERAVDEEERRAAFADLKNGLERTTHLVHQ 270 Query: 279 GVTYARTLHGAAEAPCRIDPDALLDSLVCDYVDAGKEVSLHGAIGTALVT-----RP--- 330 +T AR A + ++D ALL S+V D V+ HG I L RP Sbjct: 271 LLTLARQ-EPDAMSFTQVDLRALLGSVVGDL----SSVAEHGGIDLGLSDQGDDGRPLRV 325 Query: 331 ----QALKRILGNLVDNALKF---GGAAELEVSAQADGAVTIAVLDRGPGIPADSLEAVF 383 AL+ + NLVDNAL++ GG ++ V G T+ V D GPGI L VF Sbjct: 326 TGNADALRILFNNLVDNALRYTPAGGVVDVGVDLSTAGYCTVVVQDSGPGIAESELPRVF 385 Query: 384 EPFVRL----EASRNRNTGGTGLGLAIARQLTLAMDAKLSLHNRTGGGLEARLML 434 + F R E S +R G+GLGLAI RQ+ + L N TG GL+AR++ Sbjct: 386 DRFYRAQHSQEGSGSRAAFGSGLGLAIVRQIADLHRVPVELRN-TGHGLQARVVF 439 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,331,806 Number of extensions: 54559 Number of successful extensions: 350 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 296 Number of HSP's successfully gapped: 35 Length of query: 438 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 350 Effective length of database: 1,203,190 Effective search space: 421116500 Effective search space used: 421116500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)