BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0005.p (171 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310849|ref|YP_003774941.1| two component transcription reg... 223 5e-60 gi|300313665|ref|YP_003777757.1| two component transcription reg... 169 8e-44 gi|300313830|ref|YP_003777922.1| response regulator protein [Her... 160 5e-41 gi|300311469|ref|YP_003775561.1| oxidative stress resistance two... 128 2e-31 gi|300310592|ref|YP_003774684.1| phosphate regulon two-component... 107 5e-25 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 223 bits (569), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 112/162 (69%), Positives = 128/162 (79%), Gaps = 1/162 (0%) Query: 4 PVLMLTARSEETDRIVGLEMGADDYLTKPFAVRELMARIRSVLRRARMLPPNMQVTEAVQ 63 PV+MLTAR E DRI+GLEMGADDYL KPF REL ARIRSVLRR + LPPNM + Sbjct: 80 PVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVAA 139 Query: 64 MLGFGDWRLDTTARHLLDQDGTMVALSGAEYRLLRVFLDHPQRVLTRDQLLNLTQGRASD 123 M F W LD TARHL+++DG +VALSGAE+RLL+VFLDHP RVL RDQLL LTQGR SD Sbjct: 140 M-RFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESD 198 Query: 124 PFDRSIDLLVSRLRQRLLDGAREPRYIKTLRNEGYVFSATVT 165 PFDRS+D+ +SRLRQ+L D AR P IKT+RNEGYV + TVT Sbjct: 199 PFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT 240 >gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 169 bits (429), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 84/161 (52%), Positives = 112/161 (69%), Gaps = 1/161 (0%) Query: 4 PVLMLTARSEETDRIVGLEMGADDYLTKPFAVRELMARIRSVLRRARMLPPNMQVTEAVQ 63 P++MLTAR DRIVGLE+GADDYL KPF REL+ARI+ +LRRAR P ++ + V Sbjct: 77 PLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILRRARSFPEKLE-ADRVS 135 Query: 64 MLGFGDWRLDTTARHLLDQDGTMVALSGAEYRLLRVFLDHPQRVLTRDQLLNLTQGRASD 123 + F W+LDT AR + G + L G++Y++LR L+HP+R L+RD LLN G+ + Sbjct: 136 HIHFAGWKLDTQARQAISPSGVTITLGGSDYQVLRALLEHPRRALSRDFLLNTVYGKEAM 195 Query: 124 PFDRSIDLLVSRLRQRLLDGAREPRYIKTLRNEGYVFSATV 164 PFDRSID+ +SRLRQ+L D REP I+T+RN GY+ A V Sbjct: 196 PFDRSIDVCISRLRQQLGDNPREPALIRTVRNTGYMLMADV 236 >gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 160 bits (405), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 80/162 (49%), Positives = 113/162 (69%), Gaps = 5/162 (3%) Query: 4 PVLMLTARSEETDRIVGLEMGADDYLTKPFAVRELMARIRSVLRRARMLPPNMQVTEAVQ 63 PV+MLTA S+ETDR+VGLE+GADDY+ KP++ REL+ARI+++ RR + + A + Sbjct: 77 PVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRI-----GIDSSAAPR 131 Query: 64 MLGFGDWRLDTTARHLLDQDGTMVALSGAEYRLLRVFLDHPQRVLTRDQLLNLTQGRASD 123 F + LDT R L+D G +V L+G +Y+LL+ F++HP VL R+ L T+GR + Sbjct: 132 YYRFAGFSLDTVERTLVDSQGDIVPLTGMDYQLLKYFVEHPGDVLDRNVLCEETRGRDAG 191 Query: 124 PFDRSIDLLVSRLRQRLLDGAREPRYIKTLRNEGYVFSATVT 165 P DRS+D+ +S+LR RL DG R+P IKT+R GYVFSA V+ Sbjct: 192 PLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVS 233 >gi|300311469|ref|YP_003775561.1| oxidative stress resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 128 bits (322), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 103/157 (65%), Gaps = 1/157 (0%) Query: 4 PVLMLTARSEETDRIVGLEMGADDYLTKPFAVRELMARIRSVLRRARMLPPNMQVTEAVQ 63 P++MLTA+ E+ DRI+GLEMGADDYL KPF REL+ARI +VLRR +E + Sbjct: 91 PIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGPDELPGAPSETPE 150 Query: 64 MLGFGDWRLDTTARHLLDQDGTMVALSGAEYRLLRVFLDHPQRVLTRDQLLNLTQGRASD 123 FGD+ LD R L ++G ++L+ E+ +L+VF + ++ L+R++L+ + +GR + Sbjct: 151 TFEFGDFILDLGTRT-LKKNGDTISLTTGEFSVLKVFARNARQPLSREKLMEMARGREYE 209 Query: 124 PFDRSIDLLVSRLRQRLLDGAREPRYIKTLRNEGYVF 160 FDRS+D+ +SRLR+ + P YI+T+ GYVF Sbjct: 210 VFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVF 246 >gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 107 bits (267), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 13/158 (8%) Query: 5 VLMLTARSEETDRIVGLEMGADDYLTKPFAVRELMARIRSVLRRARMLPPNMQVTEAVQM 64 V+MLTA+S E D+I GL+ GADDY+TKPF+ REL ARI+++LRR P + Q ++ Sbjct: 98 VIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS--PEHAQ-----EV 150 Query: 65 LGFGDWRLDTTARHLLDQDGTMVALSGAEYRLLRVFLDHPQRVLTRDQLLNLTQGRASDP 124 + G LD A + G + + AEY+LL+ FL HP RV +R QLL+ G Sbjct: 151 MSAGPITLD-PASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVWGDHVVI 209 Query: 125 FDRSIDLLVSRLRQRLLDGAREPRY-IKTLRNEGYVFS 161 +R++D+ V RLR+ L R+ Y IKT+R+ GY+ S Sbjct: 210 EERTVDVHVLRLRKAL----RDAEYLIKTVRSVGYMLS 243 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 493,010 Number of extensions: 18746 Number of successful extensions: 160 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 25 Length of query: 171 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 92 Effective length of database: 1,245,805 Effective search space: 114614060 Effective search space used: 114614060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 127 (53.5 bits)