BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0002.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313955|ref|YP_003778047.1| thioredoxin protein [Herbaspiri...    71   8e-14

>gi|300313955|ref|YP_003778047.1| thioredoxin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 175

 Score = 70.9 bits (172), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 33/155 (21%)

Query: 32  AAPEFTGVDKWLNSEPLTMQQLRGKVVLVDFWTYTCINCINTLPYVKSWYQKYKDQGLVV 91
           AAP+ T     L+ + + ++ LRGKVV+V+FW  +C  C+  +P +   Y K+KD+GL  
Sbjct: 38  AAPDVTFTK--LDGQQVNLKDLRGKVVMVNFWATSCTTCVGEMPQMIDTYNKFKDRGLDF 95

Query: 92  VGV----HTPEY----------PFERSTDNVKTAIKRFGITYPVAQDNRYATWSAYNNQY 137
           V V      P Y          PF+ + D   T  K FG                 + + 
Sbjct: 96  VAVAMSYDPPNYVLNYTETRKLPFKVALDPQDTLAKAFG-----------------DVKL 138

Query: 138 WPAFYLIDKKGQVVYTHFGEGQYAQTEAAIKNLLA 172
            P  ++IDK+G ++  + GE Q+A+    ++  L+
Sbjct: 139 TPTTFVIDKQGNIIKRYVGEPQFAELHQLLEKALS 173


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 642,321
Number of extensions: 26094
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)