BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0001.p
         (120 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313452|ref|YP_003777544.1| ABC transporter ATPase [Herbasp...   221   1e-59
gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas...    62   2e-11
gi|300314011|ref|YP_003778103.1| phosphate/phosphonate ABC trans...    61   3e-11
gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa...    58   2e-10
gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas...    57   3e-10

>gi|300313452|ref|YP_003777544.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 264

 Score =  221 bits (563), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/116 (96%), Positives = 114/116 (98%)

Query: 5   LSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVSESKLTTMMVTHS 64
           LSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVSESKLTTMMVTHS
Sbjct: 149 LSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVSESKLTTMMVTHS 208

Query: 65  MRQALDYGDRTVMLHQGQVVLDVSGEERAGLDVPDLLKMFERTRGEVLSDDALLLG 120
           MRQALDYGDRTVMLHQG+VVLDVSG ERAGLDVPDLLKMFE+TRGE LSDDALLLG
Sbjct: 209 MRQALDYGDRTVMLHQGRVVLDVSGPERAGLDVPDLLKMFEQTRGEKLSDDALLLG 264


>gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score = 61.6 bits (148), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 47/80 (58%)

Query: 5   LSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVSESKLTTMMVTHS 64
           +SGGQ+Q V +  A     ++LL DE T+ALDP+T   +LEL  KI  E  LT +++TH 
Sbjct: 137 ISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKELGLTIVLITHQ 196

Query: 65  MRQALDYGDRTVMLHQGQVV 84
           M       DR  ++  GQV+
Sbjct: 197 MEVIKQICDRVAVMEAGQVI 216


>gi|300314011|ref|YP_003778103.1| phosphate/phosphonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score = 60.8 bits (146), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%)

Query: 5   LSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVSESKLTTMMVTHS 64
           LSGGQRQ V +  A +Q  R+LL DE T++LDPKT+  ++ L  +     K+  ++  H 
Sbjct: 153 LSGGQRQRVGIARALMQRPRLLLADEPTSSLDPKTSFEIISLLKEQGRAQKIPVIVNIHD 212

Query: 65  MRQALDYGDRTVMLHQGQVVLDVSGEE 91
           +  A  Y DR + +  G VV D + E 
Sbjct: 213 VELAKRYADRIIGMSGGHVVYDGNAEN 239


>gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 57.8 bits (138), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 5   LSGGQRQAVSLLMA-SLQPSRILLLDEHTAALDPKTAAFVLELTAKIVSESKLTTMMVTH 63
           LSGGQ+Q V++  + +LQP +++L DE T+ALDP+    VL++  ++ SE  +T ++VTH
Sbjct: 140 LSGGQQQRVAIARSLALQP-QLMLFDEVTSALDPELTGEVLKVMEQMASEG-MTMILVTH 197

Query: 64  SMRQALDYGDRTVMLHQGQV 83
            M  A    D+ + +HQGQV
Sbjct: 198 EMAFARRVADQVIFMHQGQV 217


>gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 389

 Score = 57.4 bits (137), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query: 5   LSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVSESKLTTMMVTHS 64
           LSGGQ+Q V +  A      ILL DE T+ALDP+T   +L+L   I  +  +T +++TH 
Sbjct: 178 LSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITIILITHE 237

Query: 65  MRQALDYGDRTVMLHQGQV 83
           M    +  DR ++L QG+V
Sbjct: 238 MSVIREIADRVLVLEQGRV 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 337,387
Number of extensions: 11233
Number of successful extensions: 219
Number of sequences better than 1.0e-08: 26
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 26
Length of query: 120
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,269,480
Effective search space: 58396080
Effective search space used: 58396080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)