BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0006.p
         (82 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t...   107   1e-25
gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa...    64   2e-12
gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC t...    63   4e-12
gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa...    63   5e-12
gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t...    61   2e-11

>gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score =  107 bits (268), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/54 (94%), Positives = 53/54 (98%)

Query: 29  KHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPELVRNDERVIKAYLGEE 82
           +HGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPE VR+DERVIKAYLGEE
Sbjct: 205 EHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSDERVIKAYLGEE 258


>gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 64.3 bits (155), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 42/59 (71%)

Query: 24  LLAVXKHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPELVRNDERVIKAYLGEE 82
           ++ + + G  + +IEHDM  +MG+ +RI V+  GK I  GTP+ ++N++ VI+AYLG+E
Sbjct: 193 IVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGKE 251


>gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score = 63.2 bits (152), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 35/48 (72%)

Query: 33  AVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPELVRNDERVIKAYLG 80
           A+LLIEHD+ L+ G+SDR++V+ HG  I  G P  VR D  VI+AYLG
Sbjct: 209 AILLIEHDIGLVFGLSDRVVVLHHGSKIADGAPAAVRQDAAVIEAYLG 256


>gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score = 62.8 bits (151), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 40/52 (76%)

Query: 29  KHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPELVRNDERVIKAYLG 80
           + G  ++LIEHDM ++M ISDR++V+++GK I  GTPE V  +E VIKAYLG
Sbjct: 239 QFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVMGNEDVIKAYLG 290


>gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score = 60.8 bits (146), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 24  LLAVXKHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPELVRNDERVIKAYLG 80
           L+ +   G  +LLIEHD+ L+MG+ +RI V+++GKPI  G P  V+ +  VI+AYLG
Sbjct: 196 LVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNPAVIEAYLG 252


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 242,728
Number of extensions: 8187
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 11
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 11
Length of query: 82
Length of database: 1,619,870
Length adjustment: 53
Effective length of query: 29
Effective length of database: 1,368,915
Effective search space: 39698535
Effective search space used: 39698535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)