BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0002.p (311 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313025|ref|YP_003777117.1| chemotaxis signal transduction ... 321 5e-89 gi|300311277|ref|YP_003775369.1| chemotaxis signal transduction ... 320 7e-89 >gi|300313025|ref|YP_003777117.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 321 bits (822), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 159/235 (67%), Positives = 189/235 (80%) Query: 1 VPMVPITTAAGTKAPMLGMVNIRGQVISVIDLPAVTGCKPKTGLNILLITEYARHTQAFA 60 VPM+ IT AAG ++PM+GMVNIRGQV+SV+DLPAV GCK G NILLITE+ARHTQAFA Sbjct: 52 VPMMDITAAAGMRSPMMGMVNIRGQVMSVVDLPAVAGCKAGHGNNILLITEFARHTQAFA 111 Query: 61 VESVEEIVRLDWSQVLSAEASAGGDLVTSIARLDSDVDGSRLVQVLDVEQILNMTSPVKQ 120 VESVEEIVRLDWSQVL A++ + G LVTSIARLDS+VDG RLVQVLDVE ILN+ SPVK+ Sbjct: 112 VESVEEIVRLDWSQVLPADSHSPGSLVTSIARLDSEVDGGRLVQVLDVEHILNLVSPVKE 171 Query: 121 ALDNGHDGALKSLVKPGAIVLAADDSKVARALIEDGLTTLGVPYIMTKSGKEAWEKLQAL 180 + GA + +KPGA+VLAADDS++ARALIE L L +P+IM G +AW+KLQ L Sbjct: 172 QMQPAPPGAAELKLKPGAVVLAADDSRMARALIEQCLKDLNLPFIMETDGLQAWKKLQQL 231 Query: 181 GAEAQREGTQIADKVALMLTDLEMPEMDGFTLTRNIKGDQRYKGIPVVIHSSLSG 235 A +EG + DKVA++LTDLEMPEMDGFTLTR IK +YK +PVVIHSSL+G Sbjct: 232 SQAAAQEGKPLTDKVAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTG 286 >gi|300311277|ref|YP_003775369.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 320 bits (821), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 159/236 (67%), Positives = 188/236 (79%), Gaps = 1/236 (0%) Query: 1 VPMVPITTAAGTKAPMLGMVNIRGQVISVIDLPAVTGCKPKTGLNILLITEYARHTQAFA 60 VPM P+T AAGT++PMLGMVNIRGQ+ISVIDLPAV GC PKTGLNILL+TEYAR TQAFA Sbjct: 50 VPMPPVTKAAGTQSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFA 109 Query: 61 VESVEEIVRLDWSQVLSAEASAGGDLVTSIARLDSDVDGSRLVQVLDVEQILNMTSPVKQ 120 VESV+EIVRL+WSQVLSAE S+GG VTSIARLD+D D SRL QVLDVEQIL+ P + Sbjct: 110 VESVDEIVRLEWSQVLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDR 169 Query: 121 ALD-NGHDGALKSLVKPGAIVLAADDSKVARALIEDGLTTLGVPYIMTKSGKEAWEKLQA 179 L + + ++PG + +AADDSKVAR+LIE GL + +PY M +GKEAWEK+Q Sbjct: 170 DLKMESLEKSASHGIRPGTVAIAADDSKVARSLIEQGLRAMEIPYEMHVTGKEAWEKIQK 229 Query: 180 LGAEAQREGTQIADKVALMLTDLEMPEMDGFTLTRNIKGDQRYKGIPVVIHSSLSG 235 L EA+ EG I+DK++ +LTDLEMPEMDGFTLTRNIK + K IPV+IHSSLSG Sbjct: 230 LAREARAEGRPISDKISFVLTDLEMPEMDGFTLTRNIKREDYLKSIPVIIHSSLSG 285 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.131 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 917,389 Number of extensions: 35830 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 137 Number of HSP's successfully gapped: 2 Length of query: 311 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 226 Effective length of database: 1,217,395 Effective search space: 275131270 Effective search space used: 275131270 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 130 (54.7 bits)