BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0060.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase...   677   0.0  
gi|300313015|ref|YP_003777107.1| maleylacetate reductase [Herbas...    91   1e-19

>gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/379 (85%), Positives = 351/379 (92%)

Query: 1   MALINYITQVQFDFGALALLQQECDRIGIRKPLIVTDMGIRNAGILDKVVAQLKDGAQVA 60
           MALINYITQVQFD+GALALLQQECDR+GI+KPL+VTDMGIRNAG+LDKV+ QLK+G    
Sbjct: 1   MALINYITQVQFDYGALALLQQECDRLGIKKPLVVTDMGIRNAGLLDKVLGQLKEGVGAV 60

Query: 61  VFDQTPPNPNENAVRAAVKMFRDGACDGIIAVGGGSSIDLAKGVAVCGTHEGPLKSFALI 120
           V+DQTPPNPNE AVRAAV +FR   CDGI+AVGGGSSIDLAKGVAVCGTHEGPLKSFALI
Sbjct: 61  VYDQTPPNPNEGAVRAAVALFRQHGCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALI 120

Query: 121 EGGLANITAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGVLSPYLVPRLAICDPELT 180
           EGGLANITAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVG++SPYLVP+LAICDPELT
Sbjct: 121 EGGLANITAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGIISPYLVPKLAICDPELT 180

Query: 181 LNLPAMMTAATGMDAIAHCLETFMAPSFNPPADGIALDGLWRAWAHIERATKEPHDREAR 240
           L LP +MTAATGMDAIAHCLETFMAPSFNPPADGIALDGLWRAWAHIERAT+EP DREAR
Sbjct: 181 LGLPPLMTAATGMDAIAHCLETFMAPSFNPPADGIALDGLWRAWAHIERATREPGDREAR 240

Query: 241 LNMMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAIIEFNKDSESVIK 300
           LNMMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAII FN+ + S++K
Sbjct: 241 LNMMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAIIAFNESAASMVK 300

Query: 301 EKKLARIAHAMGLAGEADIGPAIKDMSKRLGLPTGLAELGVTEDMYPKIIQGALADHSHK 360
           + K+AR+AHAMGL   A+IGPAI++MS+RLGLP GL ELGVTE M+P+IIQGALADHSHK
Sbjct: 301 DNKMARMAHAMGLGSGAEIGPAIREMSRRLGLPAGLGELGVTESMFPQIIQGALADHSHK 360

Query: 361 TNPRVASEDDYARMLTQSM 379
           TNPR ASE DY  ML QSM
Sbjct: 361 TNPREASEQDYLHMLQQSM 379


>gi|300313015|ref|YP_003777107.1| maleylacetate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 162/358 (45%), Gaps = 40/358 (11%)

Query: 9   QVQFDFGALALLQQECDRIGIRKPLIVTDMGIRNAGILDKVVAQLKDGAQVA-VFDQTPP 67
           +V F  G+L  L +E + +G ++ L++   G R     ++V A +  GA+ A +FDQ   
Sbjct: 12  RVIFGHGSLQHLVRETELLGAQRALVLCTPGQRAEA--ERVAALI--GARCAGIFDQAVM 67

Query: 68  NPNENAVRAAVKMFRDGACDGIIAVGGGSSIDLAKGVAVCGTHEGPLKSFALIEGGLANI 127
           +      R A ++ R    D  IA+GGGS++ L K +A+    E  L             
Sbjct: 68  HVPIETARHAREVARALGADCAIAIGGGSTMGLGKAIAL----ESEL------------- 110

Query: 128 TAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGVLSPYLVPRLAICDPELTLNLPAMM 187
                P++AIPTT   GSE+      + + GRK       ++PR  I DP L+L LP  +
Sbjct: 111 -----PILAIPTTY-AGSEM-TPIYGLTEAGRKKTGRDARVLPRTVIYDPALSLGLPLDL 163

Query: 188 TAATGMDAIAHCLETFMAPSFNPPADGIALDGLWRAWAHIERATKEPHDREARLN-MMSA 246
           +  +G++A+AH  E   AP  NP    +A +GL      + +      D +AR   +  A
Sbjct: 164 SVTSGINAMAHAAEGLYAPDANPIMSLLAEEGLRALAEGLPQLAARADDIDARSRCLYGA 223

Query: 247 SMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAIIEFNKDSESVIKEKKLAR 306
            + G +    G+   H L H+LGG +  L H   + + LP          +    + + R
Sbjct: 224 WLCGTVLGNVGMSLHHKLCHTLGG-SYNLPHAQTHTVILP----HALAYNAAAAPQAMQR 278

Query: 307 IAHAMGLAGEADIGPAIKDMSKRLGLPTGLAELGVTEDMYPKIIQGALADHSHKTNPR 364
           IA A+G+    D    +  +++ L  P  L ELG+  +   +  + AL   +   NPR
Sbjct: 279 IARALGV---EDAAQGVYALARALHAPLSLKELGMPYEALAQCTEIAL--QNAYANPR 331


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,240,368
Number of extensions: 55145
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)