BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0058.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309486|ref|YP_003773578.1| antioxidant oxidoreductase [Her...   421   e-119
gi|300313595|ref|YP_003777687.1| peroxiredoxin protein [Herbaspi...    70   1e-13

>gi|300309486|ref|YP_003773578.1| antioxidant oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  421 bits (1082), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/212 (95%), Positives = 209/212 (98%)

Query: 1   MTLRLGDTAPDFEQDSSIGKIKFHEWAGDSWVVLFSHPADFTPVCTTELGLTAKLKPEFD 60
           MTLRLGDTAPDFEQ+SSIGKIKFH+WAGDSWVVLFSHPADFTPVCTTELGLTAKLKPEFD
Sbjct: 1   MTLRLGDTAPDFEQESSIGKIKFHDWAGDSWVVLFSHPADFTPVCTTELGLTAKLKPEFD 60

Query: 61  KRNVKAIALSVDGAEAHTQWIKDIEDTQKTVVGFPIVADVDKKVAGLYDMIHPNQSETAT 120
           KRNVKAIALSVDGAEAH QWIKDIE+TQ+TVVGFPIVADVDKKVAGLYDMIHPNQSETAT
Sbjct: 61  KRNVKAIALSVDGAEAHNQWIKDIEETQQTVVGFPIVADVDKKVAGLYDMIHPNQSETAT 120

Query: 121 VRSLFIIDPKKKVRLIITYPMSTGRNFDEVLRVLDALQLTDGYTVATPGNWKDGDDVIIP 180
           VRSLFIIDPKKKVRLIITYPMSTGRNFDEVLRV+DALQLTDGYTVATPGNWKDGDDVIIP
Sbjct: 121 VRSLFIIDPKKKVRLIITYPMSTGRNFDEVLRVIDALQLTDGYTVATPGNWKDGDDVIIP 180

Query: 181 LSVKDEEVIKQKYPKGYTSPRPYLRITPQPNK 212
           LS+KDEE IKQKYPKGY +PRPYLRITPQPNK
Sbjct: 181 LSIKDEETIKQKYPKGYKAPRPYLRITPQPNK 212


>gi|300313595|ref|YP_003777687.1| peroxiredoxin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 187

 Score = 70.1 bits (170), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 5/151 (3%)

Query: 31  WVVLFSHPADFTPVCTTELGLTAKLKPEFDKRNVKAIALSVDGAEAHTQWIKDIEDTQKT 90
           W V   +PADFT VC TEL   A    EF K  V+   +S D   AH  W    E  +K 
Sbjct: 33  WSVFVFYPADFTFVCPTELEDLADNYAEFKKLGVEIYGVSTDTHFAHKAWHDTSEAIKK- 91

Query: 91  VVGFPIVADVDKKVAGLYDMIHPNQSETATVRSLFIIDPKKKVRLIITYPMSTGRNFDEV 150
            V +P+V D    +A  ++++   + E   +R  F+I+P+ +++++  +    GR+  E+
Sbjct: 92  -VQYPLVGDPTATLARNFEVL--IEEEGLALRGTFVINPEGQIKVLEIHDNGIGRDASEL 148

Query: 151 LRVLDALQLTDGY-TVATPGNWKDGDDVIIP 180
           LR + A Q    +     P  W++G   + P
Sbjct: 149 LRKVKAAQYVASHPGEVCPAKWEEGAATLKP 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 710,160
Number of extensions: 28091
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)