BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0054.p (228 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313359|ref|YP_003777451.1| multidrug ABC transporter ATPas... 130 1e-31 gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPas... 112 3e-26 gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPas... 103 2e-23 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 101 6e-23 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 91 1e-19 >gi|300313359|ref|YP_003777451.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 303 Score = 130 bits (327), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 134/232 (57%), Gaps = 12/232 (5%) Query: 1 MRVGVVPQADNLDPDFTVQENLLVFARYFGISDATMAQRIPELLEFANLTAKKDARIAEL 60 M++GVVPQ DP FTV+E L + + YFG+S + + I E++E +LT K D + L Sbjct: 76 MKLGVVPQELVFDPFFTVRETLRMQSGYFGLS--SNDKWIDEVMENLDLTNKADTNMRAL 133 Query: 61 SGGMKRRLTLARALVNDPDLIFMDEPTTGLDPQARHMIWERLKNLLARGKTILLTTHFMD 120 SGGMKRR+ +A+ALV+ P +I +DEPT G+D + R +W+ + L G TI+LTTH+++ Sbjct: 134 SGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWQFIGRLNREGHTIVLTTHYLE 193 Query: 121 EAERLCDRLAVIDHGKMIAEGSPQDLIAQHIEAEVLEIYGENARSWAEQHGRSHASRVEY 180 EA+ LC+R+A++ GK++A S + LI + ++++ + + +H + Sbjct: 194 EAQALCNRIAMLKFGKVVALDSTEGLIRRISGSQMVLRLKRGSLPEGLKSLVTHPEEL-L 252 Query: 181 SGETVFCYTNDAQ-------ALLATLQHVQGVRYMHRPANLEDLFLKLTGRE 225 SG ND Q AL A + ++ A+LED+F+++ G E Sbjct: 253 SGNKYTLRVNDYQEVEPILAALRAAGAEIDDLQLQQ--ADLEDVFIQIMGDE 302 >gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 913 Score = 112 bits (279), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 91/151 (60%), Gaps = 5/151 (3%) Query: 3 VGVVPQA--DNLDPDFTVQENLLVFARYFGISDATMAQRIPELLEFANLTAKKDARIAEL 60 + +PQ NL P +V+ENL AR FG QRI +L L +L Sbjct: 84 IAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERRQRIDDLTHSTGLQPFLARPAGQL 143 Query: 61 SGGMKRRLTLARALVNDPDLIFMDEPTTGLDPQARHMIWERLKNLLAR--GKTILLTTHF 118 SGGMK++L+L AL++DPDL+ +DEPTTG+DP AR WE + L R G ++++ T + Sbjct: 144 SGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQFWELIARLRQRHPGMSVIVATAY 203 Query: 119 MDEAERLCDRLAVIDHGKMIAEGSPQDLIAQ 149 MDEA+ D LAV+D G+++A G+P L+A+ Sbjct: 204 MDEAQAF-DWLAVMDQGQVLATGTPAALLAR 233 Score = 104 bits (260), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 93/147 (63%), Gaps = 2/147 (1%) Query: 2 RVGVVPQADNLDPDFTVQENLLVFARYFGISDATMAQRIPELLEFANLTAKKDARIAELS 61 RVG + Q+ +L D +V++NL + AR F + A + R+ E+ L D+ A+L Sbjct: 346 RVGYMSQSFSLYKDLSVRQNLALHARLFHLPAAQIGPRVAEMARRFALMPVMDSLAADLP 405 Query: 62 GGMKRRLTLARALVNDPDLIFMDEPTTGLDPQARHMIWERLKNLLARGK-TILLTTHFMD 120 G+++RL+LA A ++ P+++ +DEPT+G+DP AR W+ L L R K TI L+THFM+ Sbjct: 406 MGIRQRLSLAVATIHGPEILILDEPTSGVDPVARDHFWQLLVTLSRRDKVTIFLSTHFMN 465 Query: 121 EAERLCDRLAVIDHGKMIAEGSPQDLI 147 EA R CDR++++ GK++ +P L+ Sbjct: 466 EALR-CDRMSMMHAGKVLDSDTPAALM 491 >gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 923 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 89/149 (59%), Gaps = 5/149 (3%) Query: 2 RVGVVPQA--DNLDPDFTVQENLLVFARYFGISDATMAQRIPELLEFANLTAKKDARIAE 59 R+ +PQ NL P +V+ENL F R FG + +RI EL L + Sbjct: 86 RIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQDASERRRRIDELTTSTGLDKFLARPAGK 145 Query: 60 LSGGMKRRLTLARALVNDPDLIFMDEPTTGLDPQARHMIWERLKNLLAR--GKTILLTTH 117 LSGGMK++L L +L++DPDL+ +DEPTTG+DP +R W+ + ++ + G ++++ T Sbjct: 146 LSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIAHIRQQRAGMSVIVATA 205 Query: 118 FMDEAERLCDRLAVIDHGKMIAEGSPQDL 146 +M+EA+R D L +D G+++A G+P L Sbjct: 206 YMEEADRF-DWLVAMDEGRVLATGTPVQL 233 Score = 101 bits (252), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 99/157 (63%), Gaps = 3/157 (1%) Query: 2 RVGVVPQADNLDPDFTVQENLLVFARYFGISDATMAQRIPELLEFANLTAKKDARIAELS 61 RVG + QA +L + +V++NL++ AR + + +A R E+ L D+ L Sbjct: 349 RVGYMSQAFSLYGELSVRQNLVLHARLYRVPAEQIAARTDEMARRFGLLDVMDSLPESLP 408 Query: 62 GGMKRRLTLARALVNDPDLIFMDEPTTGLDPQARHMIWERLKNLLARGK-TILLTTHFMD 120 G+++RL+LA A+V+ P+L+ +DEPT+G+DP AR + W+ + L + + TI ++THFM+ Sbjct: 409 LGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIGLARQDQVTIFISTHFMN 468 Query: 121 EAERLCDRLAVIDHGKMIAEGSPQDLIAQHIEAEVLE 157 EA R CDR++++ G+++ +PQ L+ Q A+ LE Sbjct: 469 EALR-CDRISLMHAGRVLVSATPQALMQQR-GAQTLE 503 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 101 bits (251), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 90/148 (60%), Gaps = 1/148 (0%) Query: 3 VGVVPQADNLDPDFTVQENLLVFARYFGISDATMAQRIPELLEFANLTAKKDARIAELSG 62 +G++ Q NL +V +N+ + G S A +A ++ LLE LTA +D A++SG Sbjct: 80 IGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPLLELVGLTALRDRYPAQISG 139 Query: 63 GMKRRLTLARALVNDPDLIFMDEPTTGLDPQARHMIWERLKNLLAR-GKTILLTTHFMDE 121 G K+R+ +ARAL NDP ++ DE T+ LDP+ I E L+ + G TI+L TH M+ Sbjct: 140 GQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKELGLTIVLITHQMEV 199 Query: 122 AERLCDRLAVIDHGKMIAEGSPQDLIAQ 149 +++CDR+AV++ G++I +G D+ Q Sbjct: 200 IKQICDRVAVMEAGQVIEQGEVLDVFRQ 227 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 1/145 (0%) Query: 3 VGVVPQADNLDPDFTVQENLLVFARYFGISDATMAQRIPELLEFANLTAKKDARIAELSG 62 VG+V Q L P+ +V EN+ + I+ A+R+ LLE +L R+ +LSG Sbjct: 85 VGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVERLLEMVHLQGLSHRRVDQLSG 144 Query: 63 GMKRRLTLARALVNDPDLIFMDEPTTGLDPQARHMIWERLKNLL-ARGKTILLTTHFMDE 121 G K+R+ LARAL +P ++ +DEP T LD + R + L LL + G T + TH E Sbjct: 145 GQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVTHDQGE 204 Query: 122 AERLCDRLAVIDHGKMIAEGSPQDL 146 A L DR+ V++ GK+ G+PQ++ Sbjct: 205 AMALGDRIVVMERGKISQIGTPQEI 229 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 730,597 Number of extensions: 29870 Number of successful extensions: 317 Number of sequences better than 1.0e-08: 113 Number of HSP's gapped: 257 Number of HSP's successfully gapped: 121 Length of query: 228 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 146 Effective length of database: 1,231,600 Effective search space: 179813600 Effective search space used: 179813600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)