BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0037.p
         (179 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309468|ref|YP_003773560.1| 50S ribosomal protein L5 [Herba...   352   1e-98

>gi|300309468|ref|YP_003773560.1| 50S ribosomal protein L5
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score =  352 bits (902), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 171/179 (95%), Positives = 177/179 (98%)

Query: 1   MARLQEFYKEKVVADLTAKYAYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI 60
           MARLQ+FYK+KVVADLT KY+YKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI
Sbjct: 1   MARLQQFYKDKVVADLTTKYSYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI 60

Query: 61  AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGAQMYEFLDRFITVALPRVRDFRGVSGR 120
           AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGA+MYEFLDR ITVALPRVRDFRGVSGR
Sbjct: 61  AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGARMYEFLDRLITVALPRVRDFRGVSGR 120

Query: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGLNISITTTAKTDDEAKSLLAAFKFPFRN 179
           AFDGRGNYNIGVKEQIIFPEIEYDKIDALRG+NISITTTAKTDDEAK+LLAAFKFPFRN
Sbjct: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 493,636
Number of extensions: 19199
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 100
Effective length of database: 1,245,805
Effective search space: 124580500
Effective search space used: 124580500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)