BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0023.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309446|ref|YP_003773538.1| 50s ribosomal protein L7/L12 [H...   162   1e-41

>gi|300309446|ref|YP_003773538.1| 50s ribosomal protein L7/L12
           [Herbaspirillum seropedicae SmR1]
          Length = 126

 Score =  162 bits (410), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/126 (89%), Positives = 116/126 (92%), Gaps = 1/126 (0%)

Query: 1   MAISKDDILEAVGALTVLELNDLVKAFEEKFGVSAAAMAVAGPAGGGAGAAAA-EEQTEF 59
           MAISK+DILEAVGAL+V+ELNDLVKAFEEKFGVSAAAMA     G   G AAA EEQTEF
Sbjct: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGAAGGGAAAAEEQTEF 60

Query: 60  TVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAG 119
           TVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAG
Sbjct: 61  TVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAG 120

Query: 120 AKAELK 125
           AKAELK
Sbjct: 121 AKAELK 126


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.129    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 298,945
Number of extensions: 6756
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)