BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0021.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309444|ref|YP_003773536.1| 50s ribosomal protein L1 [Herba...   397   e-112

>gi|300309444|ref|YP_003773536.1| 50s ribosomal protein L1
           [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  397 bits (1019), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/231 (89%), Positives = 226/231 (97%)

Query: 1   MAKLTKRAKAQEGKIDSTKAYPFDNALALVKEFATAKFNESIDVSVQLGVDAKKSDQVVR 60
           MAK++KR KA + K+D TKAYPFDNA++L+KEFATAKFNESIDVSVQLGVDAKKSDQVVR
Sbjct: 1   MAKVSKRVKAMKEKVDRTKAYPFDNAVSLIKEFATAKFNESIDVSVQLGVDAKKSDQVVR 60

Query: 61  GSVVLPAGTGKTVRVAVFASGEKAEQAKAAGADVVGMEDLAEQVKAGNMPFDIVIASPDT 120
           GSVVLPAGTGKTVRVAVFASG+KAE AKAAGADVVGMEDLAE+VKAG+MPFDIVIASPDT
Sbjct: 61  GSVVLPAGTGKTVRVAVFASGDKAEAAKAAGADVVGMEDLAERVKAGDMPFDIVIASPDT 120

Query: 121 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKAGIIHATIGRKSF 180
           MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDK+GIIHATIGRKSF
Sbjct: 121 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKSGIIHATIGRKSF 180

Query: 181 SDADLKSNLVALIDALNKAKPATSKGVYLRKVSLSSTMGAGVRVDQSTLSA 231
           SDADLK+NL+ALIDALNKAKPA+SKGVYLRK++LSSTMGAGVRVDQ++L+A
Sbjct: 181 SDADLKANLLALIDALNKAKPASSKGVYLRKIALSSTMGAGVRVDQASLAA 231


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 617,327
Number of extensions: 23190
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)