BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0020.p
         (143 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309443|ref|YP_003773535.1| 50s ribosomal protein L11 [Herb...   282   8e-78

>gi|300309443|ref|YP_003773535.1| 50s ribosomal protein L11
           [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score =  282 bits (721), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 142/143 (99%), Positives = 143/143 (100%)

Query: 1   MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT 60
           MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT
Sbjct: 1   MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT 60

Query: 61  AFADKSFTFVMKTPPATILIKKAAGIQKGSAKPHTDKVGKITRKQAEEIATQKKPDLTAA 120
           AFADKSFTFVMKTPPATILIKKAAGIQKGS+KPHTDKVGKITRKQAEEIATQKKPDLTAA
Sbjct: 61  AFADKSFTFVMKTPPATILIKKAAGIQKGSSKPHTDKVGKITRKQAEEIATQKKPDLTAA 120

Query: 121 DLEAAVRTIAGSARSMGITVEGL 143
           DLEAAVRTIAGSARSMGITVEGL
Sbjct: 121 DLEAAVRTIAGSARSMGITVEGL 143


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 426,825
Number of extensions: 16089
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,255,275
Effective search space: 82848150
Effective search space used: 82848150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)