BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0014.p (396 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309453|ref|YP_003773545.1| elongation factor G1 [Herbaspir... 790 0.0 gi|300313617|ref|YP_003777709.1| translation elongation factor [... 646 0.0 gi|300312895|ref|YP_003776987.1| GTP-binding elongation factor p... 58 1e-09 >gi|300309453|ref|YP_003773545.1| elongation factor G1 [Herbaspirillum seropedicae SmR1] Length = 701 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/396 (97%), Positives = 392/396 (98%) Query: 1 VRKAEDTEKFSALAFKIATDPFVGQLCFIRCYSGTLNSGDTVFNSVKSKKERIGRIVQMH 60 VR+A+D EKFSALAFKIATDPFVGQLCFIRCYSGTLNSGDTV NSVKSKKERIGRIVQMH Sbjct: 306 VREAKDDEKFSALAFKIATDPFVGQLCFIRCYSGTLNSGDTVLNSVKSKKERIGRIVQMH 365 Query: 61 ANQREEIKEMLAGDIAAVVGLKDTTTGDTLCDDKAVVVLERMVFPEPVISQAVEPKTKAD 120 ANQREEIKEM+AGDIAAVVGLKDTTTGDTLCDDKA+VVLERMVFPEPVISQAVEPKTKAD Sbjct: 366 ANQREEIKEMMAGDIAAVVGLKDTTTGDTLCDDKAMVVLERMVFPEPVISQAVEPKTKAD 425 Query: 121 QEKMGLALNRLAAEDPSFRVRTDEESGQTIIAGMGELHLDIIVDRMKREFNVEATVGKPQ 180 QEKMGLALNRLAAEDPSFRVRTDEESGQTIIAGMGELHLDIIVDRMKREFNVEATVGKPQ Sbjct: 426 QEKMGLALNRLAAEDPSFRVRTDEESGQTIIAGMGELHLDIIVDRMKREFNVEATVGKPQ 485 Query: 181 VAYRETIRKTCEEIEGKFVKQSGGRGQYGHVVLKIEPQEPGKGFEFVDAIKGGTVPREFI 240 VAYRETIRKTCEE EGKFVKQSGGRGQYGHVVLKIEPQE GKGFEFVDAIKGGTVPREFI Sbjct: 486 VAYRETIRKTCEESEGKFVKQSGGRGQYGHVVLKIEPQEAGKGFEFVDAIKGGTVPREFI 545 Query: 241 PAVEKGVRETLNTGVLAGYPVVDVKVTLFFGSYHDVDSNENAFRMAGSMAFKDGCRKASP 300 PAVEKGVRETLNTGVLAGYPVVDVKVTLFFGSYHDVDSNENAFRMAGSMAFK+GCR+ASP Sbjct: 546 PAVEKGVRETLNTGVLAGYPVVDVKVTLFFGSYHDVDSNENAFRMAGSMAFKEGCRRASP 605 Query: 301 VILEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGMDEIAGGGGKIIKAEVPLSEMFGYST 360 VILEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGMDEIAGGGGKIIKAEVPLSEMFGYST Sbjct: 606 VILEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGMDEIAGGGGKIIKAEVPLSEMFGYST 665 Query: 361 SLRSATQGRATYSMEFKHYSEAPKNVIDAIVTSKAK 396 +LRSATQGRATYSMEFKHYSEAPKNVIDAIVTSKAK Sbjct: 666 TLRSATQGRATYSMEFKHYSEAPKNVIDAIVTSKAK 701 >gi|300313617|ref|YP_003777709.1| translation elongation factor [Herbaspirillum seropedicae SmR1] Length = 701 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/395 (76%), Positives = 349/395 (88%), Gaps = 1/395 (0%) Query: 2 RKAEDTEKFSALAFKIATDPFVGQLCFIRCYSGTLNSGDTVFNSVKSKKERIGRIVQMHA 61 R D E FSALAFKI TDPFVGQL F R YSG +NSGDTV+N VK KKER+GRI+QMHA Sbjct: 307 RHPSDEEPFSALAFKIMTDPFVGQLTFFRVYSGIVNSGDTVYNPVKGKKERLGRILQMHA 366 Query: 62 NQREEIKEMLAGDIAAVVGLKDTTTGDTLCDDKAVVVLERMVFPEPVISQAVEPKTKADQ 121 N+R+EIKE+ AGDIAA VGLKD TTGDTL D + ++LERM+FPEPVISQAVEPKTKADQ Sbjct: 367 NERKEIKEVFAGDIAAAVGLKDVTTGDTLSDPEHPIILERMIFPEPVISQAVEPKTKADQ 426 Query: 122 EKMGLALNRLAAEDPSFRVRTDEESGQTIIAGMGELHLDIIVDRMKREFNVEATVGKPQV 181 EKMG+ALNRLA EDPSFRV TDEESGQTI++GMGELHL+I+VDRMKREFNVEATVGKPQV Sbjct: 427 EKMGIALNRLAQEDPSFRVHTDEESGQTIMSGMGELHLEILVDRMKREFNVEATVGKPQV 486 Query: 182 AYRETIRKTCEEIEGKFVKQSGGRGQYGHVVLKIEPQEPGKGFEFVDAIKGGTVPREFIP 241 AYRE IRK E++EGKFVKQSGGRGQYGHVV+K+EPQ GKG+EFVDAIKGG VPREFIP Sbjct: 487 AYREAIRKAVEDVEGKFVKQSGGRGQYGHVVIKLEPQPAGKGYEFVDAIKGGVVPREFIP 546 Query: 242 AVEKGVRETLNTGVLAGYPVVDVKVTLFFGSYHDVDSNENAFRMAGSMAFKDGCRKASPV 301 AV+KG++E+L GVLAGYPVVDVK TL FGSYHDVDSNENAFRMAGSMAFK+ ++A P+ Sbjct: 547 AVDKGIQESLKAGVLAGYPVVDVKATLTFGSYHDVDSNENAFRMAGSMAFKEAMKRAGPM 606 Query: 302 ILEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGMDEIAGGGGKIIKAEVPLSEMFGYSTS 361 +LEPMM VEVETPE++ G VMGDLSSRRGMVQGM+++ GGGK+++AEVPLSEMFGYST+ Sbjct: 607 LLEPMMQVEVETPEEFMGNVMGDLSSRRGMVQGMEDMV-GGGKLVRAEVPLSEMFGYSTT 665 Query: 362 LRSATQGRATYSMEFKHYSEAPKNVIDAIVTSKAK 396 LRS +QGRATYSMEFKHY+EAP+ V++ + K K Sbjct: 666 LRSLSQGRATYSMEFKHYAEAPRQVVEQLSGGKGK 700 >gi|300312895|ref|YP_003776987.1| GTP-binding elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 627 Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 15/177 (8%) Query: 22 FVGQLCFIRCYSGTLNSG-DTVFNS---VKSKKERIGRIVQMHANQREEIKEMLAGDIAA 77 +VG++ R +G + G D V+ + K K RI +++ +R + E LAGDI Sbjct: 234 YVGKIGVGRILAGRVKGGQDVVWMNGPDDKPTKARINQVLTFKGLERVLVDEALAGDIVL 293 Query: 78 VVGLKDTTTGDTLCDDKAVVVLERMVFPEPVISQAVEPKTKADQEKMGLAL------NRL 131 + G+++ G T+C A L + EP ++ T + G + +RL Sbjct: 294 INGIEEIGIGSTICSPDAPNGLPMLKVDEPTLTMNFMVNTSPLAGREGKFVTTRQIRDRL 353 Query: 132 AAE---DPSFRVRTDEESGQTI-IAGMGELHLDIIVDRMKREFNVEATVGKPQVAYR 184 E + + RV E T ++G GELHL I+++ M+RE E V +P+V +R Sbjct: 354 EKELKSNMALRVVQAENDDSTYEVSGRGELHLTILIENMRRE-GFELAVSRPRVVFR 409 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,145,484 Number of extensions: 46883 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 3 Length of query: 396 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 309 Effective length of database: 1,207,925 Effective search space: 373248825 Effective search space used: 373248825 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)