BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0013.p
         (392 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309439|ref|YP_003773531.1| muropeptide permease of the maj...   596   e-171

>gi|300309439|ref|YP_003773531.1| muropeptide permease of the major
           facilitator superfamily protein [Herbaspirillum
           seropedicae SmR1]
          Length = 388

 Score =  596 bits (1536), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 306/358 (85%), Positives = 321/358 (89%)

Query: 1   MTDNRISWHSYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKALGLFALVMFP 60
           MT    SWH YLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVK LGLFALVMFP
Sbjct: 1   MTAPAASWHQYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTLGLFALVMFP 60

Query: 61  YTWKFLWSPLMDRFHFGRMGRRRGWMFFTQIGLFLGIGAMGMLDPQTQIGTIAFMASAVA 120
           YTWKF+WSPLMDRFHFG MGRRRGWM FTQ+ LFL IG MGMLDP T + TIAFMAS VA
Sbjct: 61  YTWKFVWSPLMDRFHFGGMGRRRGWMVFTQLLLFLSIGGMGMLDPLTDVSTIAFMASVVA 120

Query: 121 FLSASQDIVVDAYRREILPEEELGLGSAIHVNAYKLSGMVPGALSLVLADLMPWQTVFWI 180
           FLSASQDI +DAYRREILPE ELGLGSAIHVNAYKLSGMVPGALSLVLAD MPW TVFWI
Sbjct: 121 FLSASQDIAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLVLADQMPWPTVFWI 180

Query: 181 TAGFMLPGLLCTLAVKEPVVYGVPPKNLREAVVLPFREFVTRGGWNKALWVLAFIFLYKL 240
           TA FMLPGLLC+L VKEP VYG PPK+L EAVVLPFREF+ RGGW  ALWVL FIFLYKL
Sbjct: 181 TAAFMLPGLLCSLLVKEPKVYGTPPKSLTEAVVLPFREFIARGGWGNALWVLGFIFLYKL 240

Query: 241 GDSMATALATKFYIDLGFSMTQIGVVSKTTSLWASVVGGIVGGVWMIRLGINKALWVFGV 300
           GDSMATALATKFYIDLGFSMT+IGVVSKTTSLWASV GGI+GG+WM+RLGIN+ LWVFGV
Sbjct: 241 GDSMATALATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWMVRLGINRGLWVFGV 300

Query: 301 IQAVAILGFAWLAHVGASTVALAVVIGIEAFGVGLGTAAFVAYIMRETDPRYTATSHA 358
           +QAV ILGFAWLAHVGA+   LAVVIG+EAFGVGLGT AFVAYIMRETDPRYTAT  A
Sbjct: 301 LQAVPILGFAWLAHVGANLPVLAVVIGLEAFGVGLGTTAFVAYIMRETDPRYTATQFA 358


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.141    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,151,828
Number of extensions: 44987
Number of successful extensions: 218
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,207,925
Effective search space: 368417125
Effective search space used: 368417125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)